PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01493-augustus-gene-0.32-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family WRKY
Protein Properties Length: 502aa    MW: 53740.1 Da    PI: 7.6807
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01493-augustus-gene-0.32-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32.1e-30152211159
                                                    ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                                    ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+a+d +++++tYeg+Hnh+
  maker-scaffold01493-augustus-gene-0.32-mRNA-1 152 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIApSCPVRKQVQRCAQDMTILITTYEGTHNHP 211
                                                    58***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-31137211IPR003657WRKY domain
SuperFamilySSF1182901.03E-26145212IPR003657WRKY domain
PROSITE profilePS5081127.232147213IPR003657WRKY domain
SMARTSM007741.6E-35152212IPR003657WRKY domain
PfamPF031061.9E-26153211IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MEAANKERSS HGGGVNEEKR NESSAHEEGC KEESIVIKVP PMGGSLKEPD STSSTSRKEQ  60
DDQLQSARAE MGEMREENQR LKNLGLDCKL ELSKPIEKQS PVNSSEEVKE EAGETWAPSK  120
ALKRSGDDEA PQQNPVKKAR VCVRARCDTP TMNDGCQWRK YGQKIAKGNP CPRAYYRCTI  180
APSCPVRKQV QRCAQDMTIL ITTYEGTHNH PLSMSATAMA STTSAAASML LSGSSSSSQF  240
PGHNSLATSG LNYYLSDDIK SKQFYLPNNS SFSSSVPSCP TITLDLTSAP SSSSSTHFNR  300
LSSNYPPKYS STSLNFSSSE SNAVSWANGF HSYGSTQPYY NRNQIGNLPI GRQIENNIYQ  360
SYMQKTNPSP PQHSQQDNSA IAAATKAITA DPSFQSALVA ALSSIMGTGG TATSGGALGN  420
HGGGDNNFGQ KSRWGSELFQ APSTTFPASP PTGNGCASSF LNETQSTTNS QPGSLMFLPP  480
SLPLSTSKSA SASPSDNRDH TN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-19139212173WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002267867.31e-144PREDICTED: probable WRKY transcription factor 72 isoform X1
RefseqXP_010663394.11e-144PREDICTED: probable WRKY transcription factor 72 isoform X2
SwissprotQ9LXG82e-73WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBLD7SIE71e-144D7SIE7_VITVI; Putative uncharacterized protein
STRINGVIT_17s0000g05810.t011e-144(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.12e-56WRKY DNA-binding protein 72