PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01451-snap-gene-0.32-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 280aa    MW: 31529 Da    PI: 8.3305
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01451-snap-gene-0.32-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-05115134120
                                                EEETTTTEEESSHHHHHHHH CS
                                    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                                ++C+ C k F+r  nL+ H+
  maker-scaffold01451-snap-gene-0.32-mRNA-1 115 FSCHVCLKIFNRYNNLQMHL 134
                                                89*****************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.51E-5106137No hitNo description
PROSITE profilePS501579.473115142IPR007087Zinc finger, C2H2
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
SuperFamilySSF576671.53E-5184219No hitNo description
Gene3DG3DSA:3.30.160.607.2E-4195219IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009813Biological Processflavonoid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MKPFEISLSI NPLASSSSSD HTDTEPLNLF PSMDQNSLYP DPSLSNLPSW PTVSMKENPK  60
ACSDDNEDVT VALNIGLPNY SSGFIDANTM ETANIAANNY WIPTPEQIHI GFTHFSCHVC  120
LKIFNRYNNL QMHLWGHGSQ YRRGAYSLKG SQPQPMLSIP CYCCAEGCKN NISHPRAKPL  180
KDFRTLQTHY QRKHGEKPFA CRKCGKLLAV KGDWRTHEKN CGKRWLCVCG SDFKHKRSLK  240
DHIKAFGFGH SPCPPIFEGY DEVLKGTFPF HLCLVLLGHA
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023914530.10.0protein TRANSPARENT TESTA 1-like
SwissprotQ8VWG31e-102TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLA0A2N9EYG11e-152A0A2N9EYG1_FAGSY; Uncharacterized protein
STRINGEOY159711e-130(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-104C2H2 family protein
Publications ? help Back to Top
  1. Lian J, et al.
    Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus.
    Plant Sci., 2017. 254: p. 32-47
    [PMID:27964783]