PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01373-augustus-gene-0.36-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family WRKY
Protein Properties Length: 307aa    MW: 34164.4 Da    PI: 7.1798
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01373-augustus-gene-0.36-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.72.9e-34154211259
                                                    --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                                           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                                    +Dgy+WrKYGqK vk+s+fprsYYrCt+a+C+vkk+vers +dp++v++tYeg+H+h+
  maker-scaffold01373-augustus-gene-0.36-mRNA-1 154 EDGYRWRKYGQKAVKNSPFPRSYYRCTTASCNVKKRVERSFTDPTIVVTTYEGQHTHP 211
                                                    8********************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381301.3E-1141307IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.807.9E-35138213IPR003657WRKY domain
SuperFamilySSF1182902.48E-29145213IPR003657WRKY domain
PROSITE profilePS5081131.904148213IPR003657WRKY domain
SMARTSM007746.7E-40153212IPR003657WRKY domain
PfamPF031061.6E-26154211IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MERKEMIKME ELVGSSSFTD HISDSYPFSG IFDFSEGEKS SLGFMELLGT GVQDYTSPLF  60
DLPPISMAPS APLPAVKECS EVLNQPATPN SSSISSASSE AVNDTEQTNN KAVDQEEEQP  120
DKTKKQLKPK KTNQKRQREP RFAFMTKSEV DHLEDGYRWR KYGQKAVKNS PFPRSYYRCT  180
TASCNVKKRV ERSFTDPTIV VTTYEGQHTH PSPVMPRQNF AGAPPGSGGV SATSFTMPMP  240
RTLSHYQQQH QQSLINPLTA SNFAINGLLA NNPGLLRDTR FCTQGAALLK DHGLLQDIVP  300
SYMLKEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-271462131077Probable WRKY transcription factor 4
2lex_A2e-271462131077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023896446.10.0probable WRKY transcription factor 23
SwissprotO229001e-70WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A2N9IR371e-172A0A2N9IR37_FAGSY; WRKY transcription factor
STRINGcassava4.1_012593m1e-117(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.12e-60WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. PrĂ¡t T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]