PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01279-snap-gene-0.42-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family Nin-like
Protein Properties Length: 208aa    MW: 24112.8 Da    PI: 8.3547
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01279-snap-gene-0.42-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK86.13e-2780130252
                                     RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                                                +k +s e++s+yF++pi++AAkeL+v+lT+LK++CR++GI+RWPhRk+ sl
  maker-scaffold01279-snap-gene-0.42-mRNA-1  80 SKMLSKETISQYFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSL 130
                                                57899*******************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151918.45164150IPR003035RWP-RK domain
PfamPF020421.1E-2283130IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051302Biological Processregulation of cell division
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MASFPTDPLY ASLDLEPTPT IQDDFFFSCG NRPEVWNEIV AGFEPQNQAL ILSSTIEKKG  60
KEVKEERKKK RCREERCSSS KMLSKETISQ YFYMPITQAA KELNVGLTLL KKRCRELGIR  120
RWPHRKLMSL QMLIKNVQEL DKEEGEESEA KLREAIEILE GERKLLEEIP DAQLEDNTKR  180
LRQACFKANY KKRKLMGMVD SQSCSSSN
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023886578.11e-123protein RKD2-like
SwissprotQ9M9U92e-60RKD1_ARATH; Protein RKD1
TrEMBLA0A2N9H0731e-115A0A2N9H073_FAGSY; Uncharacterized protein
STRINGEOY218634e-89(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61843052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.12e-58RWP-RK domain-containing protein