PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01190-snap-gene-0.33-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NF-X1
Protein Properties Length: 874aa    MW: 97665 Da    PI: 8.4274
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01190-snap-gene-0.33-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.42e-05187205120
                                   zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                                                CG H C  lCH+GpCp+Cp+
  maker-scaffold01190-snap-gene-0.33-mRNA-1 187 CG-HNCLLLCHPGPCPSCPK 205
                                                **.***************96 PP

2zf-NF-X123.11.6e-07239256118
                                   zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                                                CG HkC ++CH GpCppC
  maker-scaffold01190-snap-gene-0.33-mRNA-1 239 CGVHKCAQPCHDGPCPPC 256
                                                ****************** PP

3zf-NF-X1186.1e-06400419120
                                   zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                                                CG+H C++ C+ G+CppC++
  maker-scaffold01190-snap-gene-0.33-mRNA-1 400 CGRHACKRRCCDGDCPPCSE 419
                                                ******************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500898.59474141IPR001841Zinc finger, RING-type
PROSITE patternPS01359074140IPR019786Zinc finger, PHD-type, conserved site
CDDcd060088.03E-7175223No hitNo description
SMARTSM004380.016187205IPR000967Zinc finger, NF-X1-type
PfamPF014220.0022187204IPR000967Zinc finger, NF-X1-type
CDDcd060081.23E-9229277No hitNo description
SMARTSM004381.4E-4239258IPR000967Zinc finger, NF-X1-type
PfamPF014225.1E-6239256IPR000967Zinc finger, NF-X1-type
CDDcd060081.84E-6282330No hitNo description
SMARTSM004380.074292312IPR000967Zinc finger, NF-X1-type
PfamPF014220.96292311IPR000967Zinc finger, NF-X1-type
CDDcd060082.29E-8337386No hitNo description
SMARTSM004380.52347367IPR000967Zinc finger, NF-X1-type
PfamPF014220.098347366IPR000967Zinc finger, NF-X1-type
CDDcd060085.71E-8390438No hitNo description
SMARTSM004380.0092400419IPR000967Zinc finger, NF-X1-type
PfamPF014228.5E-4400418IPR000967Zinc finger, NF-X1-type
CDDcd060084.76E-11417465No hitNo description
PfamPF014220.0057421445IPR000967Zinc finger, NF-X1-type
SMARTSM004380.011427446IPR000967Zinc finger, NF-X1-type
SMARTSM0043834484505IPR000967Zinc finger, NF-X1-type
PfamPF014224.8494504IPR000967Zinc finger, NF-X1-type
SMARTSM00438100513558IPR000967Zinc finger, NF-X1-type
PfamPF0142240513522IPR000967Zinc finger, NF-X1-type
SMARTSM0043831595632IPR000967Zinc finger, NF-X1-type
PfamPF014220.15595605IPR000967Zinc finger, NF-X1-type
CDDcd060081.63E-4626667No hitNo description
SMARTSM004380.014638656IPR000967Zinc finger, NF-X1-type
PfamPF014220.16638655IPR000967Zinc finger, NF-X1-type
SMARTSM004385701722IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 874 aa     Download sequence    Send to blast
MTSTNDDHRH RQFSDSDSES DHGHAGSSSL LHADLSNSIF KSYLEFTNQS SPSASDLSKI  60
QSFLTSSSSG ALSCLICLER IKPSHPTWSC SSLCFAVFHL ACIQSWSRQS SDLSAARATT  120
RLPISSQHAS EISTWNCPKC RVQYSRSQIP KHYHCFCGKL QDPPSDDPWV LPHSCGEVCN  180
RPLKHNCGHN CLLLCHPGPC PSCPKLIKSK CYCGAVSEVR RCGFKNFACN NLCSKRLQCG  240
VHKCAQPCHD GPCPPCAARG AYACRCGKER QERECHDREF RCEGACNRAL KCGKHRCEKG  300
CHEVGGCGEC PLQGKRACPC GKRVYEGMPC DVTTPLCGAT CDKTLSCGLH RCHERCHRGT  360
CMETCRIVVI KSCRCGSLKK EVPCYQDLAC ERKCQIMRDC GRHACKRRCC DGDCPPCSEV  420
CGRKLRCKNH KCPAPCHRGA CAPCPVMVTI SCACGETHFE VPCGTEMDQK PPRCPKQCHI  480
ARLCRHGSNS KPHKCHYGAC PPCRLICDEE YPCGHKCNLR CHGPISPPNP EFTLKPKKKK  540
SIHQAEYTPG SPCPPCPELV WRSCVGQHVG ADRRMVCSDK TQFSCDNLCG NPLSCGNHYC  600
TKTCHALKDL SATPFQKERS NSCEECHLPC QKERRPTCSH PCPLPCHPGE CPPCKVLVKR  660
SCHCGSMVHV FECLYYNSLS EKEQLAVRSC GGPCHRKLPN CTHLCPETCH PGVCPSPDKC  720
RKKVFVRCKC QTLKKEWFCL DVQAAHWNAG SDPRDIPKNQ YGIGLLPCNS ACKSKVQVVD  780
SELHSRKSKV MEEKEPETEK NVPKRKKRRQ QVQEGKQISR LQKIVVAMKW ILLIVTLVVV  840
LIAIANYGYK GLMWLSDWMN EVEEQRQRRT YRRV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1802808PKRKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015877400.10.0PREDICTED: NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLB9T5650.0B9T565_RICCO; Nuclear transcription factor, X-box binding, putative
STRINGVIT_13s0067g00920.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102253237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors