PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01178-augustus-gene-0.35-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family WRKY
Protein Properties Length: 380aa    MW: 41808.9 Da    PI: 6.5071
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01178-augustus-gene-0.35-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.63.9e-31178236259
                                                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                                     D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+geH+h+
  maker-scaffold01178-augustus-gene-0.35-mRNA-1 178 ADVWAWRKYGQKPIKGSPYPRNYYRCSSTkGCTARKQVERSNTDPNTFIITYTGEHTHP 236
                                                    69*************************998****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-31163238IPR003657WRKY domain
SuperFamilySSF1182906.02E-27171238IPR003657WRKY domain
PROSITE profilePS5081133.189172238IPR003657WRKY domain
SMARTSM007745.5E-38177237IPR003657WRKY domain
PfamPF031063.2E-26179236IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007263Biological Processnitric oxide mediated signal transduction
GO:0009739Biological Processresponse to gibberellin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MTDWDLNAVV RSCRYSTTTT TTNTTAASEN PLSCLASQTF KEESDPFSFP HFVEPRTNAF  60
QELEELCKPF FPTTAITATT ITTTSHGIKP NSSISDLQHR LHGSSSFGFR GILDQQRLQG  120
PQQQQQQQQH VYQQEFLKPQ ASSSMSLPTM QSQVPRARKR KNQQKRTVRH VTAENLSADV  180
WAWRKYGQKP IKGSPYPRNY YRCSSTKGCT ARKQVERSNT DPNTFIITYT GEHTHPRPTH  240
RNSLAGSVRN KFKSADAANT NGNIASCFSP QSASCLSPTT PLTVLQTDEE AANHNINEET  300
DKMIDGNDKE SEEMVDDDED DDILIPNIAM NEDIFMGFQE LGYGNSPGGG SGDNFSSGST  360
PRGGASSGSS WAPCGSAAAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-17166238274WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00561DAPTransfer from AT5G52830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015878306.11e-109PREDICTED: probable WRKY transcription factor 27
TrEMBLA0A140H8S31e-102A0A140H8S3_MANES; WRKY transcription factor 69
STRINGPOPTR_0004s07050.12e-71(Populus trichocarpa)
STRINGGLYMA10G37460.19e-73(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67943249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.15e-61WRKY DNA-binding protein 27