PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01152-snap-gene-0.15-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 471aa    MW: 51410.9 Da    PI: 8.6902
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01152-snap-gene-0.15-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.3e-052143123
                                               EEETTTTEEESSHHHHHHHHHHT CS
                                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                               + C+ C+k F r  nL+ H r H
  maker-scaffold01152-snap-gene-0.15-mRNA-1 21 FICEVCNKGFQREQNLQLHRRGH 43
                                               89*******************88 PP

2zf-C2H213.50.0002297119123
                                                EEETTTTEEESSHHHHHHHHHHT CS
                                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                                +kC++C+k++  +s+ k H +t+
  maker-scaffold01152-snap-gene-0.15-mRNA-1  97 WKCEKCSKRYAVQSDWKAHSKTC 119
                                                58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.0E-62043IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.28E-72043No hitNo description
PfamPF121712.2E-52143IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.992143IPR007087Zinc finger, C2H2
SMARTSM003550.00522143IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802343IPR007087Zinc finger, C2H2
SMARTSM003551306292IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-585118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.28E-792117No hitNo description
SMARTSM0035513097117IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MDPDAEVIAL SPKTLMATNR FICEVCNKGF QREQNLQLHR RGHNLPWKLK QKTTKEPKRK  60
VYLCPEPTCV HHDPSRALGD LTGIKKHYSR KHGEKKWKCE KCSKRYAVQS DWKAHSKTCG  120
TREYRCDCGT LFSRRDSFIT HRAFCDALAQ ESARQPPNMG STIGSHIYGN SNMGLGLSQV  180
GPQISSMQDQ NNQSNDMLRL GSSRPGQFDH LLPPGIGSSF RPPHPMPSSA LFMQDSSQNY  240
HQEHQSQQGL MSEKSFHGLM PFSDLQNSTT SNPPPAGTNL FNLGFMSNTS SNSSSNANNN  300
TSLPSSAMLM PNHFNNENGS GGGSEGSNLF SNNMMADQIT SGVPSLYTTS VQSNTAMPHM  360
SATALLQKAA QMGSTSSNNN TSSSLLRSFG SSSSKSERQV VQGGLSSMFG ENSENHFQDL  420
MNSFTSGNSS IFGSKFGTYD TNRTNLELMD QEPNNKPNQN LSGGGGGSGS D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-3493154364Zinc finger protein JACKDAW
5b3h_F3e-3493154364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1604541e-144AC160454.31 Glycine max cultivar Williams 82 clone gmw1-15k6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023918803.10.0protein indeterminate-domain 5, chloroplastic
SwissprotQ9ZUL31e-134IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A2N9EFZ10.0A0A2N9EFZ1_FAGSY; Uncharacterized protein
STRINGPOPTR_0008s14180.40.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-111indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]