PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01064-snap-gene-0.47-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family Nin-like
Protein Properties Length: 224aa    MW: 25917.3 Da    PI: 4.8025
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01064-snap-gene-0.47-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK85.93.5e-2763113252
                                     RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                                                +k +s e++s+yF++pi++AAkeL+v+lT+LK++CR++GI+RWPhRk+ sl
  maker-scaffold01064-snap-gene-0.47-mRNA-1  63 SKMLSKETISQYFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSL 113
                                                57899*******************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151918.38347133IPR003035RWP-RK domain
PfamPF020421.2E-2266113IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MASFPTDPLY ASLDLEPTTA IQVAGFEPQN QTLILSSNNE KRDKEVKEER RKKRCREERC  60
SSSKMLSKET ISQYFYMPIT QAAKELNVGL TLLKKRCREL GIRRWPHRKL MSLQTLIKNV  120
QELAKEEGEE SEVKLREAIE ILEGERKLLE EIPDAQLEDN TKRLRQACFK ANYKKRKLMG  180
MVDSQSCSSS NRSSMDGTGD EKEEEEDDQD DEEEEESLVG PLFF
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023886578.11e-108protein RKD2-like
SwissprotQ9M9U93e-60RKD1_ARATH; Protein RKD1
TrEMBLA0A2N9H0731e-105A0A2N9H073_FAGSY; Uncharacterized protein
STRINGEOY218631e-87(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61843052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.15e-58RWP-RK domain-containing protein