PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01040-augustus-gene-0.27-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family AP2
Protein Properties Length: 531aa    MW: 58142.5 Da    PI: 7.4075
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01040-augustus-gene-0.27-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.61.1e-11167223155
                                            AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                                    s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  maker-scaffold01040-augustus-gene-0.27-mRNA-1 167 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 223
                                                    57*******************5444.2455536655.779999**************98 PP

2AP247.25.6e-15266317155
                                            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                                    s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  maker-scaffold01040-augustus-gene-0.27-mRNA-1 266 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 317
                                                    57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-15167232IPR016177DNA-binding domain
PfamPF008473.8E-9167223IPR001471AP2/ERF domain
CDDcd000181.30E-18167232No hitNo description
PROSITE profilePS5103217.477168231IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-12168231IPR001471AP2/ERF domain
SMARTSM003802.6E-22168237IPR001471AP2/ERF domain
PRINTSPR003672.3E-6169180IPR001471AP2/ERF domain
PfamPF008476.9E-10266317IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-18266327IPR016177DNA-binding domain
CDDcd000182.01E-24266327No hitNo description
PROSITE profilePS5103219.045267325IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-18267326IPR001471AP2/ERF domain
SMARTSM003801.5E-33267331IPR001471AP2/ERF domain
PRINTSPR003672.3E-6307327IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MDSSPHQNWL GFSLSNHSNL PSHSSPLSLF HSFTSSSSGS VVDAAAATEK DATNLSIFTG  60
GPKLEDFLGG GSTATAPLAQ FSNETSVTTV NHVSSTHPHP TEPEHDNMYE SELKTIAASF  120
LRGFTTEQQQ QQQQQQQQLQ TQPQNLHVAT TEPPPKKTVD TFGQRTSIYR GVTRHRWTGR  180
YEAHLWDNSC RREGQSRKGR QGGYDKEEKA ARAYDLAALK YWGPTTTTNF PVCNYEKELE  240
EMKNMTRQEF VASLRRKSSG FSRGASIYRG VTRHHQHGRW QARIGRVAGN KDLYLGTFST  300
QEEAAEAYDI AAIKFRGLNA VTNFDMSRYD VKSIANSNLP IGGMSSKSKN SSDSAASDSK  360
SIDGGSRSDE RDLSSASSIT FASQPSSSSL SFAIPIKQDP SDYWSILGYQ NSATSFGNAK  420
NPSVEPHLIP STTNVSAYHH TTTLPFNMDY CASSNSASES NNGYFNAGYN VHQQHNGTSN  480
IPFATPIALS GNNSYNEGSS GYGSSWIGPA LHTFQTHAKP NLFQTPIFGM E
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023913718.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-157AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A2N9IW600.0A0A2N9IW60_FAGSY; Uncharacterized protein
STRINGEMJ268260.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125622735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-139AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]