PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00873-snap-gene-0.35-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NAC
Protein Properties Length: 441aa    MW: 50544.9 Da    PI: 5.2356
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00873-snap-gene-0.35-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM59.31.3e-1898454128
                                        NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykg..rapkgekt 119
                                                +e+ wyfF++rd+ky++g+r+nr++ +g Wk tg   ++ +  +e +g +++L +y+g  + +k+++t
  maker-scaffold00873-snap-gene-0.35-mRNA-1   9 NEEAWYFFTPRDRKYPNGSRPNRSAGDGSWKPTGIPIRIGQ-FDEYTGWRRSLDYYEGshEGEKSKRT 75 
                                                5789***********************************99.8899**********8744667889** PP

                                        NAM 120 dWvmheyrl 128
                                                +W m ey+l
  maker-scaffold00873-snap-gene-0.35-mRNA-1  76 KWKMIEYTL 84 
                                                *******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.593199IPR003441NAC domain
SuperFamilySSF1019419.29E-22794IPR003441NAC domain
PfamPF023654.8E-81184IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MVKNYKLINE EAWYFFTPRD RKYPNGSRPN RSAGDGSWKP TGIPIRIGQF DEYTGWRRSL  60
DYYEGSHEGE KSKRTKWKMI EYTLDKWVLC KVYEKVTSKK DEDDNNTQNT QSDQRNPSTS  120
PSVSNHDSSP RIIPNSLDVH GNQLEATTST PLNHTHVYHM PPQIRHFNPS LGSTYNFYNQ  180
SYHNMINSTP RVVPNSLDVH GNHLEATTST TLNHTHAYHE PLLVSTCNFS NQSNYNMIDS  240
SPRVAPNSLD VHENHLGATT STTLNHAHVY YEPLQTQHFY SSWGSANNFP NQYPVNYNME  300
MTTLNHTAMS SSSEQPTHVR EDDPLLEAHG INTFGSKQEQ QDDLSKMTSM TTNSHELPTH  360
ARKYEPPLPE VHEDDTFGSK QKQQDYLSET GDIINDWVLS DSDFDISNLD STDWLLSDSD  420
FDMIDLDFSD ILDDDNHKPN S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-2019861168NO APICAL MERISTEM PROTEIN
1ut4_B1e-2019861168NO APICAL MERISTEM PROTEIN
1ut7_A1e-2019861168NO APICAL MERISTEM PROTEIN
1ut7_B1e-2019861168NO APICAL MERISTEM PROTEIN
4dul_A1e-2019861168NAC domain-containing protein 19
4dul_B1e-2019861168NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.12e-23NAC domain containing protein 3