PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00860-augustus-gene-0.36-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NAC
Protein Properties Length: 314aa    MW: 35936.9 Da    PI: 7.9777
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00860-augustus-gene-0.36-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.14.9e-51161462128
                                            NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFsk 63 
                                                     pGfrFhPtdeelv +yL++kve+k++++ e ik++diyk++PwdLpk    + +++ewyfF++
  maker-scaffold00860-augustus-gene-0.36-mRNA-1  16 LPGFRFHPTDEELVAFYLRRKVENKTISM-ELIKQIDIYKHDPWDLPKasGSNVKDTEWYFFCR 78 
                                                    59***************************.99***************6334444888******* PP

                                            NAM  64 rdkkyatgkrknratksgyWkatgkdkevlskkgel...vglkktLvfykgrapkgektdWvmh 124
                                                    r +ky+++ r+nr+t sg+Wkatg dk+v+s +ge+   +glkktLv+y+g a kg+ktdW+mh
  maker-scaffold00860-augustus-gene-0.36-mRNA-1  79 RGRKYRNSIRPNRVTGSGFWKATGIDKPVYSMGGEDrdcIGLKKTLVYYRGAAGKGSKTDWMMH 142
                                                    *******************************94444555************************* PP

                                            NAM 125 eyrl 128
                                                    e+rl
  maker-scaffold00860-augustus-gene-0.36-mRNA-1 143 EFRL 146
                                                    **98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-5413183IPR003441NAC domain
PROSITE profilePS5100553.44515183IPR003441NAC domain
PfamPF023652.5E-2617146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MSNQGTSQLE DEADQLPGFR FHPTDEELVA FYLRRKVENK TISMELIKQI DIYKHDPWDL  60
PKASGSNVKD TEWYFFCRRG RKYRNSIRPN RVTGSGFWKA TGIDKPVYSM GGEDRDCIGL  120
KKTLVYYRGA AGKGSKTDWM MHEFRLPAPS DTNTNTNTNT KLDNAKSTAQ EAEIWTLCRI  180
FKRNLSHRKY TPDWRELSTK RHQADTSSKA CRGESSNNRE SYINFGSPFI FQNENNNEIK  240
TVNHINNESN QLHVGQLSSS IAQPPSSSSI AQLPLSSSSS FPTNPVLDAN EFFTYENWDE  300
LRSVVEFAYD PSLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-481718919171NO APICAL MERISTEM PROTEIN
1ut4_B1e-481718919171NO APICAL MERISTEM PROTEIN
1ut7_A1e-481718919171NO APICAL MERISTEM PROTEIN
1ut7_B1e-481718919171NO APICAL MERISTEM PROTEIN
3swm_A1e-481718922174NAC domain-containing protein 19
3swm_B1e-481718922174NAC domain-containing protein 19
3swm_C1e-481718922174NAC domain-containing protein 19
3swm_D1e-481718922174NAC domain-containing protein 19
3swp_A1e-481718922174NAC domain-containing protein 19
3swp_B1e-481718922174NAC domain-containing protein 19
3swp_C1e-481718922174NAC domain-containing protein 19
3swp_D1e-481718922174NAC domain-containing protein 19
4dul_A1e-481718919171NAC domain-containing protein 19
4dul_B1e-481718919171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00353DAPTransfer from AT3G12910Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023926837.10.0transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK552e-85NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A2N9FTZ11e-162A0A2N9FTZ1_FAGSY; Uncharacterized protein
STRINGcassava4.1_024488m1e-131(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.11e-90NAC family protein
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]