PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00305-augustus-gene-1.15-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family WRKY
Protein Properties Length: 258aa    MW: 28835.7 Da    PI: 10.1342
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00305-augustus-gene-1.15-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1001.4e-31192249359
                                                    -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                           WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                                    D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYegeHnh+
  maker-scaffold00305-augustus-gene-1.15-mRNA-1 192 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLIVTYEGEHNHP 249
                                                    99***********************9988****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.7E-18143188IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.1E-33178250IPR003657WRKY domain
PROSITE profilePS5081129.953185251IPR003657WRKY domain
SuperFamilySSF1182901.96E-27188250IPR003657WRKY domain
SMARTSM007742.0E-38190250IPR003657WRKY domain
PfamPF031061.8E-27192249IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MEDVEEASKA AVESSHRVLN LLSQPQDQVQ CRNLMVETRE AVSRFKKVVS ILNSRVGHAR  60
VRMPNKVQIP LPHSIFLESP LCRTDHQPKN LQFLQSSFSE NPIQDMGSNV KNGSVANLDG  120
SHGSAFHLIG APHSSDQNSQ QHKRKCSGRG DDGSVKCGSS GRCHCSKKRK HRVKRSIKVP  180
AISNKLADIP PDDYSWRKYG QKPIKGSPHP RGYYKCSSMR GCPARKHVER CLEEPSMLIV  240
TYEGEHNHPR LPSQSTTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20183252775WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7325231e-117KP732523.1 Morus alba transcription factor WRKY21-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022155836.11e-117probable WRKY transcription factor 21
SwissprotQ93WU67e-83WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLA0A151S3451e-133A0A151S345_CAJCA; Putative WRKY transcription factor 39
STRINGGSMUA_Achr9P10740_0011e-105(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.13e-85WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]