PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00249-snap-gene-0.32-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family WRKY
Protein Properties Length: 538aa    MW: 58995.7 Da    PI: 8.242
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00249-snap-gene-0.32-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.95.7e-30191250159
                                                ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                                ++Dg++WrKYGqK  kg+++pr+YYrCt + +Cpv+k+v+r+ +d +++++tYeg+Hnh+
  maker-scaffold00249-snap-gene-0.32-mRNA-1 191 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVSpSCPVRKQVQRCFNDMSILITTYEGKHNHP 250
                                                58**************************999****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-31176252IPR003657WRKY domain
SuperFamilySSF1182904.84E-27184252IPR003657WRKY domain
PROSITE profilePS5081129.218186252IPR003657WRKY domain
SMARTSM007744.6E-36191251IPR003657WRKY domain
PfamPF031062.9E-26192250IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MEKNTVDLLS RRKNQEDQLK LAEAEMGEVK EENERLKMLL EKTVKEYQSL QMQFVDILQQ  60
EAKSKDTVPS HQAKEGPELV SLSLGITSSE PKKEDKKNNS FRNGQEEEKL NGALSLGLQD  120
YRFEPSSAEH VRNTSCSNNS FEEQKEEEPT EIWPPRKILK TMKIGDDEVS QQSQVKKTRV  180
SVRARCDTPT MNDGCQWRKY GQKIAKGNPC PRAYYRCTVS PSCPVRKQVQ RCFNDMSILI  240
TTYEGKHNHP LPVSATAMAS TTSAAVSMLQ SQSSISSQGG LNTSAIVPIS TSTNSHGFNF  300
TLSQNPSPQQ LYGLPNSSIS TLNSHPTITL DLTTNAPSGL SSSFSSAPRY PSTSLNFSSS  360
FSPSLEPNYI FQTHWNNGPT SYNNHGTVPA YNKNPIGSLN SIEKQPFQEQ LYQPYMKESI  420
VAATKAIASN PKFQSVLAAA LTSYVGASSG GVKENQGACE SSSSSMNFKW GESHTINPIY  480
SSSQNGIGCG SSYLNKSSSF NSPKQGVLAL FPPNSLQLSA SNNCASAAPP DNRDHFKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21178252174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023928063.10.0probable WRKY transcription factor 72
SwissprotA0A3Q7GFB51e-109WK72A_SOLLC; WRKY transcription factor 72A
TrEMBLA0A2N9EBW90.0A0A2N9EBW9_FAGSY; Uncharacterized protein
STRINGVIT_01s0026g01730.t011e-163(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.15e-64WRKY DNA-binding protein 72
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]