PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00245-snap-gene-0.26-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HD-ZIP
Protein Properties Length: 283aa    MW: 32351.8 Da    PI: 7.9654
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00245-snap-gene-0.26-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.3e-1878131356
                                                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                                   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                                k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  maker-scaffold00245-snap-gene-0.26-mRNA-1  78 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 131
                                                456899***********************************************9 PP

2HD-ZIP_I/II129.21.7e-4177167191
                                HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkr 68 
                                                ekkrrl+ eqvk+LE++Fe  +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr
  maker-scaffold00245-snap-gene-0.26-mRNA-1  77 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKR 144
                                                69****************************************************************** PP

                                HD-ZIP_I/II  69 aydalkeenerLekeveeLreel 91 
                                                +++a+k++n++L++++++L++e+
  maker-scaffold00245-snap-gene-0.26-mRNA-1 145 QFEAVKADNDALQAQNQKLQAEI 167
                                                ********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-1952134IPR009057Homeodomain-like
SuperFamilySSF466891.58E-1967135IPR009057Homeodomain-like
PROSITE profilePS5007117.11973133IPR001356Homeobox domain
SMARTSM003891.8E-1776137IPR001356Homeobox domain
PfamPF000462.8E-1578131IPR001356Homeobox domain
CDDcd000862.21E-1578134No hitNo description
PRINTSPR000311.1E-5104113IPR000047Helix-turn-helix motif
PROSITE patternPS000270108131IPR017970Homeobox, conserved site
PRINTSPR000311.1E-5113129IPR000047Helix-turn-helix motif
PfamPF021831.3E-15133173IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MGWPSSQQIS CFNLLMKMII NIPLLSIQSY PHAHLKTFMA RVASFLGKRS MSFSGVELGD  60
DGNGEDDLSD DGSQVGEKKR RLNMEQVKTL EKNFELGNKL EPERKMQLAR ALGLQPRQIA  120
IWFQNRRARW KTKQLEKDYD LLKRQFEAVK ADNDALQAQN QKLQAEILAL KNREPTESIN  180
LNKETEGSCS NRSENSSEIK LDISRTPAID SPLSTHPTSR PLFPTSMIRP PGSVAQLFQT  240
TSRPELQCQK MDQMVKEESL STMFCGMDDQ SAFWPWLEQQ HFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125133RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023920525.11e-174homeobox-leucine zipper protein ATHB-13-like
RefseqXP_023920526.11e-174homeobox-leucine zipper protein ATHB-13-like
RefseqXP_023920527.11e-174homeobox-leucine zipper protein ATHB-13-like
SwissprotQ8LC031e-104ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A2N9J3C41e-165A0A2N9J3C4_FAGSY; Uncharacterized protein
STRINGXP_008221655.11e-151(Prunus mume)
STRINGEMJ269691e-151(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127133106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.13e-96HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]