PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold17325-abinit-gene-0.0-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 275aa    MW: 30390.5 Da    PI: 7.7134
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold17325-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00022100122123
                                                           EEETTTTEEESSHHHHHHHHHHT CS
                                               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                                           ++C++C + F ++  L  H++ H
  augustus_masked-scaffold17325-abinit-gene-0.0-mRNA-1 100 FSCNYCQRKFYSSQALGGHQNAH 122
                                                           89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.25E-696127No hitNo description
PROSITE profilePS5015711.427100127IPR007087Zinc finger, C2H2
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MDLPSPSETE TSTIFSVSES TQICLKQKPS LESPKDQQED HQKHQHADSN PDLVLDLSLS  60
SKDSQKELNP ELNLIDSFDA NSSDSPPPPP QGNETEPRVF SCNYCQRKFY SSQALGGHQN  120
AHKRERTLAK RGQKITSLSS SAFGNRYPSS MASLPLHGSF NINRSLGIRV HSRIHKPSYY  180
YQQPISTIGS SSSSSSYLYG QNVWSRQPID QQPAFGRLVQ ENFHAGSATN GVGIARFDSV  240
QGGLWWDSSG ASVAAHLNLK TKQDELQKLD LSLKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023924244.11e-170zinc finger protein 1-like
TrEMBLA0A2N9IAE71e-114A0A2N9IAE7_FAGSY; Uncharacterized protein
STRINGVIT_09s0002g09080.t018e-89(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.11e-44zinc-finger protein 1