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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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v4.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold07258-abinit-gene-0.0-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | C2H2 | ||||||||
Protein Properties | Length: 407aa MW: 46074.7 Da PI: 5.1309 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.8 | 0.00073 | 4 | 26 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C +sFs+ L H+r+H augustus_masked-scaffold07258-abinit-gene-0.0-mRNA-1 4 HKCKLCLRSFSNGRALGGHMRSH 26 79********************9 PP | |||||||
2 | zf-C2H2 | 11.9 | 0.00067 | 281 | 303 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k+F++ L H +H augustus_masked-scaffold07258-abinit-gene-0.0-mRNA-1 281 FKCETCKKTFRSYQALGGHRASH 303 89**********99999998887 PP | |||||||
3 | zf-C2H2 | 12 | 0.00065 | 336 | 358 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C ++Fs+ L H rtH augustus_masked-scaffold07258-abinit-gene-0.0-mRNA-1 336 HECPVCFRVFSSGQALGGHKRTH 358 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.7E-7 | 4 | 27 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.052 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.512 | 4 | 31 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.44E-8 | 281 | 303 | No hit | No description |
Pfam | PF13912 | 4.3E-11 | 281 | 305 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.042 | 281 | 303 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.159 | 281 | 308 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 283 | 303 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.44E-8 | 331 | 358 | No hit | No description |
Pfam | PF13912 | 8.6E-11 | 336 | 358 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.494 | 336 | 363 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.15 | 336 | 358 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 338 | 358 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MEKHKCKLCL RSFSNGRALG GHMRSHMLNL PIVQKPESPP PPPPLPPPPP LQPQPQPQQP 60 PHNQLSGTLS ASFSSSSSSE DDDDDEKGIY GLRENPKRSI RLVDPEFVDG GSVVLPDRES 120 ETESSKNPTR KRSKRTRTLD QTFHHQYHHH RIQEQAEAMK KHPKFKYKAV AADQSSWAEP 180 EPEPVSSISD TTQEEHVAFC LMMLSRDKWK KQEQQQQPQG NNEEDNEDDD VDEDEDEEDE 240 EEEEEEEQEQ EQEEEDEAVE SDESEELIKL SKTTTRTRGK FKCETCKKTF RSYQALGGHR 300 ASHKKIKLLS STTTPANNYE PKLEHRNVGT PEKKIHECPV CFRVFSSGQA LGGHKRTHVT 360 GSTSAPTSAR ASTKLGQALI DLNLPAPMED DDISQVSDAE FVNPFRR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00416 | DAP | Transfer from AT3G60580 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018853929.1 | 1e-138 | PREDICTED: zinc finger protein ZAT9-like | ||||
TrEMBL | A0A2N9GJJ7 | 1e-154 | A0A2N9GJJ7_FAGSY; Uncharacterized protein | ||||
STRING | EMJ20657 | 1e-118 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 7e-34 | C2H2-like zinc finger protein |