PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold07258-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 407aa    MW: 46074.7 Da    PI: 5.1309
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold07258-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00073426123
                                                          EEETTTTEEESSHHHHHHHHHHT CS
                                               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                                          +kC+ C +sFs+   L  H+r+H
  augustus_masked-scaffold07258-abinit-gene-0.0-mRNA-1  4 HKCKLCLRSFSNGRALGGHMRSH 26
                                                          79********************9 PP
2zf-C2H211.90.00067281303123
                                                           EEETTTTEEESSHHHHHHHHHHT CS
                                               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                                           +kC+ C+k+F++   L  H  +H
  augustus_masked-scaffold07258-abinit-gene-0.0-mRNA-1 281 FKCETCKKTFRSYQALGGHRASH 303
                                                           89**********99999998887 PP
3zf-C2H2120.00065336358123
                                                           EEETTTTEEESSHHHHHHHHHHT CS
                                               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                                           ++Cp C ++Fs+   L  H rtH
  augustus_masked-scaffold07258-abinit-gene-0.0-mRNA-1 336 HECPVCFRVFSSGQALGGHKRTH 358
                                                           79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.7E-7427IPR007087Zinc finger, C2H2
SMARTSM003550.052426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.512431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576677.44E-8281303No hitNo description
PfamPF139124.3E-11281305IPR007087Zinc finger, C2H2
SMARTSM003550.042281303IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.159281308IPR007087Zinc finger, C2H2
PROSITE patternPS000280283303IPR007087Zinc finger, C2H2
SuperFamilySSF576677.44E-8331358No hitNo description
PfamPF139128.6E-11336358IPR007087Zinc finger, C2H2
PROSITE profilePS501579.494336363IPR007087Zinc finger, C2H2
SMARTSM003550.15336358IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280338358IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MEKHKCKLCL RSFSNGRALG GHMRSHMLNL PIVQKPESPP PPPPLPPPPP LQPQPQPQQP  60
PHNQLSGTLS ASFSSSSSSE DDDDDEKGIY GLRENPKRSI RLVDPEFVDG GSVVLPDRES  120
ETESSKNPTR KRSKRTRTLD QTFHHQYHHH RIQEQAEAMK KHPKFKYKAV AADQSSWAEP  180
EPEPVSSISD TTQEEHVAFC LMMLSRDKWK KQEQQQQPQG NNEEDNEDDD VDEDEDEEDE  240
EEEEEEEQEQ EQEEEDEAVE SDESEELIKL SKTTTRTRGK FKCETCKKTF RSYQALGGHR  300
ASHKKIKLLS STTTPANNYE PKLEHRNVGT PEKKIHECPV CFRVFSSGQA LGGHKRTHVT  360
GSTSAPTSAR ASTKLGQALI DLNLPAPMED DDISQVSDAE FVNPFRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018853929.11e-138PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A2N9GJJ71e-154A0A2N9GJJ7_FAGSY; Uncharacterized protein
STRINGEMJ206571e-118(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.17e-34C2H2-like zinc finger protein