PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold06766-abinit-gene-0.1-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 393aa    MW: 43469.6 Da    PI: 8.5492
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold06766-abinit-gene-0.1-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.6e-05156179123
                                                           EEETTTTEEESSHHHHHHHHHH.T CS
                                               zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                                           ++C+ Cg+ F+ +  L++H+ t H
  augustus_masked-scaffold06766-abinit-gene-0.1-mRNA-1 156 FPCTACGEIFPKPQFLEQHQATkH 179
                                                           89******************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.515156184IPR007087Zinc finger, C2H2
PROSITE patternPS000280158179IPR007087Zinc finger, C2H2
SuperFamilySSF563995.28E-14181392No hitNo description
Gene3DG3DSA:3.90.228.104.9E-5192298IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene3DG3DSA:3.90.228.101.7E-5328392IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MASVVTFVNN FFSIFILLLL HLGCFIFTTT ADDHHQRPYS KKRKVSPLSV SHSSPSKPKK  60
ALSSSWSFVK RIFSSNSCKS NISSITQTQP TTTPPTPITT TTTLSSARSS QHSIVPLIIQ  120
PETHLSDPPR KKKSGSCSES DISADNPFFP LRNDIFPCTA CGEIFPKPQF LEQHQATKHA  180
VSELVDGDSG KNIVRIIFKT GWTDNHKSPV LHRILKIHNS PKILSRFEEY RETVKAKAAR  240
NGAVKRRDER CIADGNELLR FHCSTFLCDL GLNGNSGICN QQYCSVCGIV KSGFSPKLDG  300
ISTLSTSWKA HVAIPEEIEQ EFSFMNVKRA MLVCRVVAGR VGCDSEEVDK EDGGFDSVFG  360
RSGNGVHTSV DEEELLVFNP RAVLPCFVIV YTV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13543QRPYSKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023881281.10.0uncharacterized protein LOC111993690
RefseqXP_023894810.10.0uncharacterized protein LOC112006729
TrEMBLB9GIT80.0B9GIT8_POPTR; C2H2 family protein
STRINGPOPTR_0001s25700.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106682936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-117C2H2 family protein