PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold05732-abinit-gene-0.0-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family LBD
Protein Properties Length: 158aa    MW: 17926.3 Da    PI: 6.8942
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold05732-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.75.2e-4051041100
                                                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeereda 57 
                                                           +CaaCk+lrr+C++dC+++pyfp ++p++f +vhk++Gasnv k+l++lp + r++a
  augustus_masked-scaffold05732-abinit-gene-0.0-mRNA-1   5 RCAACKYLRRRCPSDCIFSPYFPPNDPQRFSCVHKIYGASNVGKMLQQLPSHLRSQA 61 
                                                           6******************************************************** PP

                                                DUF260  58 msslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                                                           +++l++eA+ r++dPvyG+vg+i++l+qq++++++++a++++e
  augustus_masked-scaffold05732-abinit-gene-0.0-mRNA-1  62 ADTLYFEAQYRLQDPVYGCVGIISRLHQQINSAESQVAKIRAE 104
                                                           **************************************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.3584105IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-395102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MISGRCAACK YLRRRCPSDC IFSPYFPPND PQRFSCVHKI YGASNVGKML QQLPSHLRSQ  60
AADTLYFEAQ YRLQDPVYGC VGIISRLHQQ INSAESQVAK IRAEISFLNS NAQEVEEPQV  120
DQHIEANSTF INNLLPEQIN TLDLSPYVLP STQTSWFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-35610512111LOB family transfactor Ramosa2.1
5ly0_B1e-35610512111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023896799.11e-105LOB domain-containing protein 24-like
SwissprotP594672e-49LBD23_ARATH; LOB domain-containing protein 23
SwissprotP594681e-49LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A2N9EMF14e-77A0A2N9EMF1_FAGSY; Uncharacterized protein
STRINGPOPTR_0012s13910.12e-65(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36973066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.15e-52LOB domain-containing protein 24