PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold04736-abinit-gene-0.0-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 158aa    MW: 17569.6 Da    PI: 10.4934
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold04736-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.000824062123
                                                          EEETTTTEEESSHHHHHHHHHHT CS
                                               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                                          ++C+ C++ F++   L  H  +H
  augustus_masked-scaffold04736-abinit-gene-0.0-mRNA-1 40 FVCKTCNRQFPSFQALGGHRASH 62
                                                          89**********99999998887 PP

2zf-C2H211.10.001286108123
                                                           EEETTTTEEESSHHHHHHHHHHT CS
                                               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                                           ++C++Cg  Fs    L  H+r+H
  augustus_masked-scaffold04736-abinit-gene-0.0-mRNA-1  86 HECSICGLEFSIGQALGGHMRRH 108
                                                           78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.88E-938108No hitNo description
PfamPF139121.7E-123964IPR007087Zinc finger, C2H2
SMARTSM003550.164062IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.5154067IPR007087Zinc finger, C2H2
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
PfamPF139122.3E-1085110IPR007087Zinc finger, C2H2
SMARTSM003550.3286108IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.36986113IPR007087Zinc finger, C2H2
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MKRVRDIGEV QTIDMANCLM LLSKVGQIDS IKNNSRTRAF VCKTCNRQFP SFQALGGHRA  60
SHKKPRLMAG DLSHNMPSSP VKPKTHECSI CGLEFSIGQA LGGHMRRHRA AMSEGLVVNN  120
DRLVQAVPIM KKSNSKRVLC LDLNLMPLEN DLKLCSWG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023897057.14e-97zinc finger protein ZAT11-like
SwissprotQ9SLD42e-39ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A2N9GXB12e-95A0A2N9GXB1_FAGSY; Uncharacterized protein
STRINGVIT_13s0019g00480.t017e-61(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.17e-45C2H2 family protein