PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold02769-abinit-gene-0.7-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 208aa    MW: 22515.3 Da    PI: 8.413
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold02769-abinit-gene-0.7-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.000824163123
                                                          EEETTTTEEESSHHHHHHHHHHT CS
                                               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                                          ++C+ C+++F++   L  H  +H
  augustus_masked-scaffold02769-abinit-gene-0.7-mRNA-1 41 FQCKTCDRCFPSFQALGGHRASH 63
                                                          89**********99999998887 PP

2zf-C2H214.40.00011114136123
                                                           EEETTTTEEESSHHHHHHHHHHT CS
                                               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                                           ++C++Cg  Fs+   L  H+r+H
  augustus_masked-scaffold02769-abinit-gene-0.7-mRNA-1 114 HECSICGAEFSSGQALGGHMRRH 136
                                                           78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.0E-104065IPR007087Zinc finger, C2H2
SMARTSM003550.144163IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.7644168IPR007087Zinc finger, C2H2
SuperFamilySSF576674.44E-94163No hitNo description
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
SuperFamilySSF576674.44E-9109136No hitNo description
Gene3DG3DSA:3.30.160.606.5E-4112136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.7E-13113137IPR007087Zinc finger, C2H2
PROSITE profilePS501579.743114136IPR007087Zinc finger, C2H2
SMARTSM003550.01114136IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MANCLILLAQ GHSRKVSSSE PVATTNSDKA AAAAAAGSYA FQCKTCDRCF PSFQALGGHR  60
ASHKKLKANA EEKKLVTVVD EEDVHRFNST STTLSLQTAN RVQCNSNNNK VKVHECSICG  120
AEFSSGQALG GHMRRHRTFI SSTATTMSVG ASSPDQSLEA KKQKNDILQL DLNLPAPEDD  180
QRADSKFSFM SKERVLVFSA SSLVDCHY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023888979.11e-135zinc finger protein ZAT5-like
TrEMBLA0A2N9IZW52e-93A0A2N9IZW5_FAGSY; Uncharacterized protein
STRINGXP_006493540.14e-79(Citrus sinensis)
STRINGXP_006428462.13e-79(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.13e-45C2H2 family protein