PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold02650-abinit-gene-0.6-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family TCP
Protein Properties Length: 389aa    MW: 41408.1 Da    PI: 6.4738
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold02650-abinit-gene-0.6-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP81.42.4e-251922489
                                                   TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssss 81
                                                          ++a+caar+F+L++eLG+++d++tieWLlqqa+pai+ +tgt++++a+++  ++s +ss
  augustus_masked-scaffold02650-abinit-gene-0.6-mRNA-1  1 MPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIITATGTGTIPANFStLNVSLRSS 59
                                                          9**********************************************999888888888 PP

                                                   TCP 82 asnsssg.........................k 89
                                                          +s+ s++                         +
  augustus_masked-scaffold02650-abinit-gene-0.6-mRNA-1 60 GSTLSAPpsksaphsfhgalalahhpyheegfA 92
                                                          885555544445555555555555555544442 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136921.086139IPR017887Transcription factor TCP subgroup
PfamPF036341.8E-261111IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MPATCAARVF QLTRELGHKS DGETIEWLLQ QAEPAIITAT GTGTIPANFS TLNVSLRSSG  60
STLSAPPSKS APHSFHGALA LAHHPYHEEG FAHPAFLGFH QHQQQQHQQH LMTADQIAEA  120
LPSGGGGDSG GAGDSTENYM RKRFREDLFK EDTQPNESGA SGSGGGDDES PNKYSKTGLQ  180
ISKQQQQQQQ QQQDSVTAGS SGLLRPSNIL PATAMWAVAP APTSGTGSTF WMLPVTAGGS  240
GGPSVATATS GAGPSESSHM WTFPAATSGN TLQAPLHFMP RLNFPGSLEF QQGNNSSRGS  300
PLQLGSMLMP QHQQQPSQHL GLGVSESNLG MLAALNAYSR GGLNMNSDHQ QSHALEHHHH  360
HHHHHQQQQQ HQQQPQATDS GDEDPENSQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023885446.10.0transcription factor TCP8-like
TrEMBLA0A2N9HI211e-179A0A2N9HI21_FAGSY; Uncharacterized protein
STRINGEOX971601e-164(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60773050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.13e-56TCP family protein