PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00846-abinit-gene-0.16-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 147aa    MW: 16813.7 Da    PI: 6.1328
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00846-abinit-gene-0.16-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.8e-191768256
                                                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                                           +y+GVr+++ +g+++AeIrd ++ g   r++lg+f  aeeAa+a+++a+ +++g+
  augustus_masked-scaffold00846-abinit-gene-0.16-mRNA-1 17 RYRGVRRRP-WGKYAAEIRDSTKHG--GRVWLGTFNMAEEAARAYDHAAFAMRGH 68
                                                           6********.**********65543..9*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.7211775IPR001471AP2/ERF domain
CDDcd000186.50E-271776No hitNo description
Gene3DG3DSA:3.30.730.101.3E-301777IPR001471AP2/ERF domain
SMARTSM003805.8E-331781IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-221777IPR016177DNA-binding domain
PfamPF008471.0E-131768IPR001471AP2/ERF domain
PRINTSPR003671.7E-101829IPR001471AP2/ERF domain
PRINTSPR003671.7E-104157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MEEDSKEKVK NGEKDVRYRG VRRRPWGKYA AEIRDSTKHG GRVWLGTFNM AEEAARAYDH  60
AAFAMRGHLA ILNFPDEHRL SQVESAPPTL TTSSLALSPS SNSSSSSSTF QNMERTRSEQ  120
FEKQVLEFEY LDDKLLEELL DIENKTK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-33121359114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023906347.12e-61ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC55e-41ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2N9IS697e-53A0A2N9IS69_FAGSY; Uncharacterized protein
STRINGXP_004292207.14e-46(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.13e-23ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]