PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00231-abinit-gene-1.6-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 192aa    MW: 21714.7 Da    PI: 9.7583
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00231-abinit-gene-1.6-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157e-053860123
                                                          EEETTTTEEESSHHHHHHHHHHT CS
                                               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                                          ++C+ C++ F++   L  H+++H
  augustus_masked-scaffold00231-abinit-gene-1.6-mRNA-1 38 FTCNFCKRQFRSAQALGGHMNVH 60
                                                          89*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.71E-63564No hitNo description
PfamPF139123.8E-73762IPR007087Zinc finger, C2H2
SMARTSM003550.00673860IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.0533865IPR007087Zinc finger, C2H2
PROSITE patternPS0002804060IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MEKPYLSKGE GKGKWDSNNF GFEEDHSCGV SWPAKQVFTC NFCKRQFRSA QALGGHMNVH  60
RKDRARLRLL PSSSSNSHNH NPNFTLSPSS KFLPYTHHPL PFLSSPSSSS FDEEKKLELP  120
HLDPLNPQGR NNMNKKRIIG GVLGFEELKG TFARKDELKV LKKEDTIKLG LEIGLLKDPQ  180
ADLDLELRLG FL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023875024.11e-114transcriptional regulator SUPERMAN-like
TrEMBLA0A2N9EST06e-59A0A2N9EST0_FAGSY; Uncharacterized protein
STRINGPOPTR_0002s04260.12e-38(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.11e-28C2H2 family protein