PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C026920P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TCP
Protein Properties Length: 187aa    MW: 20529 Da    PI: 5.6972
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C026920P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP101.61.3e-3138107873
             TCP   8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa....sec 73 
                      +++h+kv gRdRR+Rl+ +caar+F+L++eLG ++d++t+eWLl++a+p+i++ltg +  sa      c
  MELO3C026920P1  38 PKDRHAKVHGRDRRIRLPPLCAARVFQLTRELGNKTDGQTVEWLLKKAEPSIIALTGKNIASAtldlPGC 107
                     59********************************************************555553333222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-2738116IPR005333Transcription factor, TCP
PROSITE profilePS5136925.433892IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MGSKNMRVKK PTSNSPRNAP KLNSPIASES KLIPSKAPKD RHAKVHGRDR RIRLPPLCAA  60
RVFQLTRELG NKTDGQTVEW LLKKAEPSII ALTGKNIASA TLDLPGCSKP FDPSSSNINS  120
TTTSYFEEET LGGNNYAFPT VNECIPLPNY EFDLVSDFDM ELFAHHIATL QEVAENSEQE  180
TEDGDD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819350.0LN681935.1 Cucumis melo genomic scaffold, unanchored_scaffold00115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008465370.11e-137PREDICTED: transcription factor TCP7
SwissprotQ9FMX22e-26TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A1S3CNQ21e-136A0A1S3CNQ2_CUCME; transcription factor TCP7
STRINGXP_008465370.11e-137(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38193363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.13e-28TCP family protein