PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C024038P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family LBD
Protein Properties Length: 237aa    MW: 25568.8 Da    PI: 7.474
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C024038P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.45.6e-39251251100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC++dC++apyf++eq +++fa++hk+FGasnv+kll ++p ++r +a+ +++yeA+ar++dPvyG+v++i++lqqq++ l+++l
  MELO3C024038P1  25 PCGACKFLRRKCVADCIFAPYFCSEQgAARFAAIHKVFGASNVSKLLLHVPVHDRCEAVVTIAYEAQARIHDPVYGCVAHIFALQQQVAYLQTQL 119
                     7*************************89******************************************************************* PP

          DUF260  95 allkee 100
                      ++k++
  MELO3C024038P1 120 MQAKAQ 125
                     999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.67824126IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-3725123IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MASSSSTSTN TSVSGCGGSG GGGSPCGACK FLRRKCVADC IFAPYFCSEQ GAARFAAIHK  60
VFGASNVSKL LLHVPVHDRC EAVVTIAYEA QARIHDPVYG CVAHIFALQQ QVAYLQTQLM  120
QAKAQLAQTL MDSGSNMEIQ WTGDFNNSNL SNGSIPNNNY QTQIMNNPTP QSSLESAANN  180
DEALLFINQN QLFHESQLSR SSQEPQILQP FPRKKLSSSH ADLGELHALA LRMMRN*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00309DAPTransfer from AT2G42430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
GenBankLN6818350.0LN681835.1 Cucumis melo genomic scaffold, anchoredscaffold00064.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008461877.11e-177PREDICTED: LOB domain-containing protein 16
SwissprotQ9SLB71e-79LBD16_ARATH; LOB domain-containing protein 16
TrEMBLA0A0A0LAE81e-152A0A0A0LAE8_CUCSA; Uncharacterized protein
STRINGGLYMA03G31830.11e-80(Glycine max)
STRINGSolyc09g066260.2.12e-80(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45093358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.12e-77lateral organ boundaries-domain 16