PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C023880P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family LBD
Protein Properties Length: 222aa    MW: 24271.1 Da    PI: 4.1797
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C023880P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260116.31.9e-36121121100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++Cv+ap f  ++ +++fa+vhk+FGasnv+kll +lp+++r++a+ +++yeA  r+rdP yG++++i++lqq++ +l++e+
  MELO3C023880P1  12 SCGACKFLRRKCSDQCVFAPFFSYDEaTSHFAAVHKVFGASNVSKLLLHLPTHTRSHAAITVAYEALERMRDPTYGCIAHIFALQQEVVSLQEEI 106
                     6**********************98868******************************************************************* PP

          DUF260  95 allkee 100
                     + l+++
  MELO3C023880P1 107 EILGSQ 112
                     999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.87511113IPR004883Lateral organ boundaries, LOB
PfamPF031955.3E-3412109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MTGLNSSTTS SSCGACKFLR RKCSDQCVFA PFFSYDEATS HFAAVHKVFG ASNVSKLLLH  60
LPTHTRSHAA ITVAYEALER MRDPTYGCIA HIFALQQEVV SLQEEIEILG SQIANLATTG  120
GSIAAVENPF IDQVVQVSQQ MDGFEMTNTN YYQNELASEL PYQSFDNIQN DNTAQMISPL  180
FCLGEEDGVF EFCNSNNVVE STSAFDVSVE ENCVGYPWIV G*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
GenBankLN6818970.0LN681897.1 Cucumis melo genomic scaffold, anchoredscaffold00063.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008461694.11e-166PREDICTED: LOB domain-containing protein 33-like
SwissprotQ9LHS84e-59LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A0A0KNX81e-149A0A0A0KNX8_CUCSA; Uncharacterized protein
STRINGPOPTR_0010s20800.14e-64(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91963242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.12e-60LOB domain-containing protein 33