PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C023802P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family LBD
Protein Properties Length: 303aa    MW: 32712.4 Da    PI: 8.6248
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C023802P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.51.6e-314107199
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+
  MELO3C023802P1   4 SCNGCRVLRKGCSENCSIRPCLqwiktPESQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQA 98 
                     6********************************************************************************************** PP

          DUF260  91 kaelallke 99 
                     ++e++l ++
  MELO3C023802P1  99 AVEAVLKGA 107
                     ***998766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381553.5E-951299IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089117.1343109IPR004883Lateral organ boundaries, LOB
PfamPF031955.8E-254103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKT PESQANATVF LAKFYGRAGL MNLINAGPDH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGAPIT PINSETAATG  120
DGPPLKAYDI RHVSKDENSV ASNDGGVIRP VKTRCRFKRS SAKAKASKGI ASTVVDESTR  180
PLCSTELNRS SSGESSLSHQ SDSRHLENES KETESMISVE TAEVSPPCPV QSVLFRSEST  240
GRESVAVPIP RSELALELTL GMEPVLRAQH VIPMKKRKIE TDVGLRPKNE TCNTVLGLDF  300
AA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
GenBankLN6818560.0LN681856.1 Cucumis melo genomic scaffold, anchoredscaffold00062.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008461588.10.0PREDICTED: LOB domain-containing protein 41
SwissprotQ9M8861e-105LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A0A0LCG60.0A0A0A0LCG6_CUCSA; Uncharacterized protein
STRINGPOPTR_0005s15670.11e-123(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-100LOB domain-containing protein 41