PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C023772P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TCP
Protein Properties Length: 380aa    MW: 42643 Da    PI: 9.98
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C023772P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP140.31.6e-431102543134
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssaseceaesssssas 83 
                     gkkdrhski+T++g+RdRRvRls+++a++fFdLqd+LG+dk+skt+eWL+ ++ +aikel +t                 +a  +++++++    
  MELO3C023772P1 110 GKKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDMLGYDKASKTLEWLFSKSRKAIKELSRTknvgfhggakklslA--AA--SSDVEEEYD-- 198
                     89*************************************************************888777655543211..11..112222222.. PP

             TCP  84 nsssg.........kaaksaakskksqksaasalnlakesrakarararertrekmrikn 134
                         +         +  + ++++k s+++ + ++ +akesrakarararert ek++ ++
  MELO3C023772P1 199 ----DdkgwelkmkSMLRIDEQEKVSKEKVEIFNLVAKESRAKARARARERTMEKKQVDD 254
                     ....0223556653333333355555555555566677*****************98775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.3E-42110251IPR005333Transcription factor, TCP
PROSITE profilePS5136935.875111169IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137012.397232249IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MGSSSYNPNP FPCFPSSSSS TTNSYNLPLS IPSLLNFDPS SNNTSTVNFH HQPHQDPLSF  60
LAPYFPIAHF STLTPPETAV INFAVAGNNI QALGDMVVPS APGAGTTGMG KKDRHSKIYT  120
AQGLRDRRVR LSIDIARKFF DLQDMLGYDK ASKTLEWLFS KSRKAIKELS RTKNVGFHGG  180
AKKLSLAAAS SDVEEEYDDD KGWELKMKSM LRIDEQEKVS KEKVEIFNLV AKESRAKARA  240
RARERTMEKK QVDDSKVYGH QKGGAQEVSD HWSKHLNHST ETSNLSMEES SFMNKRKIYA  300
KKFINHDNYT TVKSCRDDEN AETSHWKLLD QMKASKRKWK PSIISGSSQR NLLISIDDIP  360
INLPRNLDTN NSAGYRFAK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-14116169154Putative transcription factor PCF6
5zkt_B4e-14116169154Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818560.0LN681856.1 Cucumis melo genomic scaffold, anchoredscaffold00062.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008461599.20.0PREDICTED: transcription factor TCP1
TrEMBLA0A1S3CGD10.0A0A1S3CGD1_CUCME; transcription factor TCP1
STRINGXP_008461599.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.25e-29TCP family protein