PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C023515P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 703aa    MW: 77499.4 Da    PI: 10.3799
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C023515P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.32.3e-101062348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48
                      W t+E++ll++avk++G ++W++++ +++       +  t+ +c +++q+++
   MELO3C023515P1 10 TWGTWEELLLACAVKRHGFKDWNSVSMEVQarsslphLLTTARNCELKFQDLK 62
                     6*****************************99999998889999999999875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.7E-4764IPR001005SANT/Myb domain
CDDcd001674.69E-51062No hitNo description
PfamPF002492.3E-91062IPR001005SANT/Myb domain
Gene3DG3DSA:1.20.920.102.1E-13317429IPR001487Bromodomain
SMARTSM002972.2E-12321430IPR001487Bromodomain
CDDcd043697.68E-12330425No hitNo description
SuperFamilySSF473704.71E-14330430IPR001487Bromodomain
PfamPF004393.6E-9334415IPR001487Bromodomain
PROSITE profilePS5001410.953340411IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MAESEQITAT WGTWEELLLA CAVKRHGFKD WNSVSMEVQA RSSLPHLLTT ARNCELKFQD  60
LKRRFTSFQN DAVLNHNASG IADKLDTALP WVDELRKLRV AELRREVQRY DVSINSLQLK  120
VKKLEEEREQ GVNDREASTG KPDLKTESRE RRSENDKKHF GEPDHRSGPN GTVTKPPPVP  180
GEDSDREDFS VNQSNSTGSK SGNPKSTAEI AKSETKPDFT GSYRPEQNRR TVEPAGPQSD  240
DGSTDTVVKN PTCDISETKK KETQRVDDSS ELADSEAQSH GGGTTTRESS EVQSSASLTG  300
RMKRKRLLRN EISGGSSGNE PRRSAGIKSR RFDEVLQLIR AHKHGSLFES RLQSQETEEY  360
KGMVRQHLDL EIVQTKINSG SYSSSNLAFY RDLLLLFNNV VTFFPKSSKE AVAACELRLL  420
VSNEMKKSLR VAQTDPLPEV VDSPPTIPSQ SKGPDLEGSQ ALLAKQKSSV PIVVCRKRSK  480
ISNPSTTGTG EKGDRSNDDE KPAADLKSSI KIVSNLVEED TTKDSKVKEK PTTGARSMRR  540
SNDSATNSSG PSSSKKQNIT SRWKPSSANE TEIPTPDKKK SETVALEKKR SAADFLKRIK  600
QNSPAETTKR NGRGGSSGGV GNATPEQKKG NSKNDKAKER VSSTMKQSND KKRPKEDASP  660
SKRSVGRPPK KAAEAEPPTP IKRAREGGGK EPLKRPRKKS KR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1693701KRPRKKSKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
GenBankLN6818040.0LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008461248.10.0PREDICTED: probable GPI-anchored adhesin-like protein PGA55
TrEMBLA0A0A0K6410.0A0A0A0K641_CUCSA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.11e-105DNA-binding bromodomain-containing protein