PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C022983P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 126aa    MW: 14002.5 Da    PI: 6.5467
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C022983P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31e-191667256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                    +y+GVr+++ +g+++AeIrd s    + +r++lg+f taeeAa+a+++a+  ++g+
  MELO3C022983P1 16 RYRGVRRRP-WGKFAAEIRDSSR---HgARIWLGTFNTAEEAARAYDRAAYMMRGH 67
                    6********.**********432...25*************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.85E-181675No hitNo description
PROSITE profilePS5103223.631674IPR001471AP2/ERF domain
PfamPF008471.4E-151667IPR001471AP2/ERF domain
SMARTSM003809.3E-361680IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-241675IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.0E-311676IPR001471AP2/ERF domain
PRINTSPR003678.8E-121728IPR001471AP2/ERF domain
PRINTSPR003678.8E-124056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MDEEGKSSND QGGEVRYRGV RRRPWGKFAA EIRDSSRHGA RIWLGTFNTA EEAARAYDRA  60
AYMMRGHLAV LNFPNEYPSL GGSSSASSSS SSAAAPRVQG QVIELEYLDD KVLEELLEYE  120
EKRKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-3511121114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818440.0LN681844.1 Cucumis melo genomic scaffold, anchoredscaffold00057.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008460635.13e-87PREDICTED: ethylene-responsive transcription factor ERF098
SwissprotQ9LTC54e-43ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A1S3CCW38e-86A0A1S3CCW3_CUCME; ethylene-responsive transcription factor ERF098
STRINGXP_008460635.11e-86(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-19ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]