PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C022520P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TCP
Protein Properties Length: 330aa    MW: 35412.7 Da    PI: 9.5366
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C022520P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.73.6e-37651672101
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.........eaesssssasnsss 87 
                     ++k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++++a ++         +         +sss
  MELO3C022520P1  65 PPKRPSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLERAEPAIIAATGTGTIPAIAMsvngtlkipT--------TTSSS 151
                     5799************************************************************999995554333333211........22222 PP

             TCP  88 g..kaaksaakskksq 101
                     +  +a +sa k+++++
  MELO3C022520P1 152 NqdSADPSAVKKRRKR 167
                     2111222222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.0E-3070163IPR005333Transcription factor, TCP
PROSITE profilePS5136926.20471125IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MADNQKQELD DDDDSPPTHL RINDSDSSRM DLLPLTPKQE HPDSNLPHDL LTFNPDIPKT  60
LSSLPPKRPS TKDRHTKVEG RGRRIRIPAT CAARIFQLTR ELGHKSDGET IRWLLERAEP  120
AIIAATGTGT IPAIAMSVNG TLKIPTTTSS SNQDSADPSA VKKRRKRPAN SDYVDVNDAL  180
SVSISASNVA GSPAVQQAFP PGFVPVWAIP SNAIIPGAVF MVPSVACSST RPQLFSFSAP  240
AAPVINTTAR PISAFPSKPD TSHIQSSPTN QSSSTSSSSA SKSQSVMAPI SSSSVQRSGK  300
TTTQMLRDFS LEIYDKEELQ FMTRSSSKH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160167VKKRRKRP
2161165KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819250.0LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008460149.10.0PREDICTED: transcription factor TCP9
SwissprotO646474e-83TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A1S3CBF30.0A0A1S3CBF3_CUCME; transcription factor TCP9
STRINGXP_008460149.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.13e-66TCP family protein