PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C022091P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TCP
Protein Properties Length: 397aa    MW: 44923.2 Da    PI: 8.3942
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C022091P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP147.77.9e-461212723135
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssasec......eaess 78 
                     +kkdrhski+T++g+RdRRvRls+++ ++fFdLqd+LG+dk+skt++WLl+++ +aikelt+              s ss+s++      e+ + 
  MELO3C022091P1 121 VKKDRHSKIYTAQGLRDRRVRLSIDISRKFFDLQDMLGYDKASKTLDWLLTKSRKAIKELTKKftqyhnnnnniitS-SSSSKFhfdhdfEECEV 214
                     79*************************************************************99988888887742.33322234444455566 PP

             TCP  79 sssasnsssgkaaksaa.kskksqksaasalnlakesrakarararertrekmriknk 135
                      s+++ ++++++      +s++ +k+   +  lakesrakarararert+ekm ++++
  MELO3C022091P1 215 ISNDDDDEEAEKIIMLGkSSSNCKKNLGFHDVLAKESRAKARARARERTKEKMIMNQQ 272
                     66666555555555555366666777777788899*******************9976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.3E-43121269IPR005333Transcription factor, TCP
PROSITE profilePS5136935.65122180IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137012.537249266IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MFSSTNNLHL FPLQQYFPSS SSSSPSYHHH HLVAPLPSPP PHHHHPEPVY IGPPQDPVLS  60
GVVAPIFLQV QEEDRDQARM KNEQQEVAVL MSQNGNNNNN SNGQCFSSST TLNNFTKKGS  120
VKKDRHSKIY TAQGLRDRRV RLSIDISRKF FDLQDMLGYD KASKTLDWLL TKSRKAIKEL  180
TKKFTQYHNN NNNIITSSSS SKFHFDHDFE ECEVISNDDD DEEAEKIIML GKSSSNCKKN  240
LGFHDVLAKE SRAKARARAR ERTKEKMIMN QQFRSPPPPP PQPSMPTPVV QKVAGSDQEN  300
NNIIGIMWKP SPMVTSSSSY QKNLVISKGE SCNYNNYCNN FYFPASNLTP NWDINIDSTF  360
ARTQSGFCSI ANMDSLPEFQ VCAKPWDSCN NNQHLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-14127180154Putative transcription factor PCF6
5zkt_B2e-14127180154Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818890.0LN681889.1 Cucumis melo genomic scaffold, anchoredscaffold00051.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011656282.10.0PREDICTED: transcription factor DICHOTOMA-like
TrEMBLA0A0A0KSL10.0A0A0A0KSL1_CUCSA; Uncharacterized protein
STRINGXP_008459708.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.25e-29TCP family protein