PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C018675P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 202aa    MW: 23141.9 Da    PI: 4.6938
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C018675P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.51.3e-32111311128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrF Ptdeelvv++L++k++  +++  +vi+++ +++++Pw+L+ k+ +e ++wyf+s++ +         r+t++g+W+  g+d +vls+
  MELO3C018675P1  11 LPPGFRFYPTDEELVVHFLHRKAALLPCHP-DVIPDLSLFTYDPWELDGKALGEGNRWYFYSRKIE--------GRVTDNGFWNPLGRDDPVLST 96 
                     79*************************999.99**************977778899******9865........699****************99 PP

             NAM  96 .kgelvglkktLvfykgrapkge.ktdWvmheyrl 128
                      ++e+vg+kk + f+ ++a  g  kt+W+mhe+rl
  MELO3C018675P1  97 aTSEVVGMKKYFLFHLQDADAGPlKTNWIMHEFRL 131
                     78899**********777766655*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-438163IPR003441NAC domain
PROSITE profilePS5100542.55211164IPR003441NAC domain
PfamPF023655.4E-2112131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MAAPDSHNFN LPPGFRFYPT DEELVVHFLH RKAALLPCHP DVIPDLSLFT YDPWELDGKA  60
LGEGNRWYFY SRKIEGRVTD NGFWNPLGRD DPVLSTATSE VVGMKKYFLF HLQDADAGPL  120
KTNWIMHEFR LADAAAASSS SSSRRRGRPK RDYSKWVLCR VYERDEDQKE EEEDGAELSC  180
LDEVFLTLDD LDEISLPNRI Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-33817014171NO APICAL MERISTEM PROTEIN
1ut4_B1e-33817014171NO APICAL MERISTEM PROTEIN
1ut7_A1e-33817014171NO APICAL MERISTEM PROTEIN
1ut7_B1e-33817014171NO APICAL MERISTEM PROTEIN
3swm_A2e-33817017174NAC domain-containing protein 19
3swm_B2e-33817017174NAC domain-containing protein 19
3swm_C2e-33817017174NAC domain-containing protein 19
3swm_D2e-33817017174NAC domain-containing protein 19
3swp_A2e-33817017174NAC domain-containing protein 19
3swp_B2e-33817017174NAC domain-containing protein 19
3swp_C2e-33817017174NAC domain-containing protein 19
3swp_D2e-33817017174NAC domain-containing protein 19
4dul_A1e-33817014171NAC domain-containing protein 19
4dul_B1e-33817014171NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144151RRGRPKRD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817921e-157LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132551e-157LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008455246.11e-149PREDICTED: NAC domain-containing protein 104
SwissprotQ8GWK63e-80NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A1S3C0L61e-147A0A1S3C0L6_CUCME; NAC domain-containing protein 104
STRINGXP_008455246.11e-148(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.12e-73xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]