PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C017305P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family LBD
Protein Properties Length: 246aa    MW: 26763.8 Da    PI: 8.4332
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C017305P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.21.3e-284107199
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl++eA+ r+ +P+ G++g+++++++ql+q 
  MELO3C017305P1   4 SCNGCRVLRKGCSESCSIRPCLqwiksPQSQANATFFLAKFYGRAGLVNLINAGPDHLRPAIFKSLLFEACGRIVNPIFGSAGLLWSGSWQLCQD 98 
                     6********************************************************************************************** PP

          DUF260  91 kaelallke 99 
                     ++e++l ++
  MELO3C017305P1  99 AVEAVLKGA 107
                     **9988766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.9733109IPR004883Lateral organ boundaries, LOB
PfamPF031953.7E-224102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSESCS IRPCLQWIKS PQSQANATFF LAKFYGRAGL VNLINAGPDH  60
LRPAIFKSLL FEACGRIVNP IFGSAGLLWS GSWQLCQDAV EAVLKGAPIL PVSSETAASH  120
MGPPLKGCDI RHVSKQQGSA SASAVRKIKT RRRFKRSGTA NKLKPKEEPG VVAVPEFIFD  180
DQTRIVSEPR CLKFELDNWK GGEWPEKECG SDDTECLSVE TVEGCQGGDV ELELTLGFGQ  240
SRMLT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
GenBankLN6818130.0LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453391.10.0PREDICTED: LOB domain-containing protein 41-like
SwissprotQ9M8864e-83LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A0A0LPS51e-168A0A0A0LPS5_CUCSA; Uncharacterized protein
STRINGVIT_17s0000g03720.t012e-94(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-84LOB domain-containing protein 41