PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C017272P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 204aa    MW: 23039.5 Da    PI: 10.2963
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C017272P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.87.5e-152169355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + GVr+++ +grWvAeI++ s   ++ r +lg+f  ae+Aa a+++a++ l+g
  MELO3C017272P1 21 FLGVRQRP-SGRWVAEIKVSS---QKLRLWLGTFNRAEDAALAYDRAARLLRG 69
                    67******.7*********42...36***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.5312077IPR001471AP2/ERF domain
SMARTSM003803.3E-312083IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-262077IPR001471AP2/ERF domain
CDDcd000181.16E-272076No hitNo description
SuperFamilySSF541712.22E-182179IPR016177DNA-binding domain
PRINTSPR003672.1E-62132IPR001471AP2/ERF domain
PfamPF008479.3E-92369IPR001471AP2/ERF domain
PRINTSPR003672.1E-64359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MATNSSSQPP NQEINHGRRR FLGVRQRPSG RWVAEIKVSS QKLRLWLGTF NRAEDAALAY  60
DRAARLLRGR SAKTNFSYDY DHGFFNSTIN QEQTPSLFEH SPKLCRLLQH ALMKNRSRLI  120
STTDHQYHHR RRHQQQISRN NGGIDSVVED TIFCSSTNLV ENDNNNNNNN NSNKGCGCGF  180
SFGGSKVYTS VFVAPSFSSD VEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1315831178Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818130.0LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016901366.11e-151PREDICTED: ethylene-responsive transcription factor ERF087-like isoform X1
TrEMBLA0A1S4DZE71e-150A0A1S4DZE7_CUCME; ethylene-responsive transcription factor ERF087-like isoform X1
STRINGXP_004155038.11e-114(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123492734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.17e-13related to AP2 11