PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C017230P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TCP
Protein Properties Length: 416aa    MW: 45769.5 Da    PI: 8.9977
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C017230P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP83.55.2e-2671160366
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........................s 66 
                     g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+L + ++sk i+WLl   k  i+ l+ +                          +
  MELO3C017230P1  71 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLKLGQPSKVIDWLLDVTKLDIDNLPPLqippgfspfhqqmlfpqyvdphhhyyT 160
                     79*************************************************************444433333333333332222222220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136926.10372130IPR017887Transcription factor TCP subgroup
PfamPF036344.0E-2172219IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MIYENYKDML RNSNSKDQKG SEAKEEGISI RSSSSNNNDG KYSFPKAPTS SSRQWSGFRN  60
PRIVRVSRSF GGKDRHSKVC TIRGLRDRRI RLSVPTAIQL YDLQDKLKLG QPSKVIDWLL  120
DVTKLDIDNL PPLQIPPGFS PFHQQMLFPQ YVDPHHHYYT SSSSSSSSRF CNSQPPPFML  180
DVKSTDAYQT TMTVEKTKLW DMDLAVLPEK AGSATTAATT TKGKWIDGSN NDSNSTQQVE  240
DYNEQISSQK LLSMAICSSN LPNMMNNNNS TPYNNYNSSH DHHHHRQQPS CLSLSQFGNN  300
NNSNGIFPSQ LVEAAQASTS SSSSSSSLFF TPYASYITNP FESHIHFLSS NSHALSNNPF  360
MSSSLHPFAT SQNLKPFPPP SFNLKQLFHA ADTNNNAGGS AGAGSSAKDG AAGNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1677131155Putative transcription factor PCF6
5zkt_B3e-1677131155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00008PBMTransfer from 496250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818130.0LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453284.10.0PREDICTED: transcription factor TCP5
RefseqXP_008453285.10.0PREDICTED: transcription factor TCP5
TrEMBLA0A1S3BX070.0A0A1S3BX07_CUCME; transcription factor TCP5
STRINGXP_008453284.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.12e-45TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5