PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C017168P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TCP
Protein Properties Length: 410aa    MW: 43993.1 Da    PI: 7.718
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C017168P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1311.1e-4080174295
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa 95 
                     ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s +++ +s+ 
  MELO3C017168P1  80 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSVPSQLRSSS 174
                     789******************************************************************99987777777777666663333332 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.6E-4184255IPR005333Transcription factor, TCP
PROSITE profilePS5136927.92386140IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0010029Biological Processregulation of seed germination
GO:0010229Biological Processinflorescence development
GO:0031347Biological Processregulation of defense response
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MEGGDELHHH HHHHHQNHHH QQHHQHRPTF PFQLLEKKDE DAASCSTSPY PSLAISADTA  60
TTTPTTNSSV VAAETSKKPP PKRTSTKDRH TKVDGRGRRI RMPALCAARV FQLTRELGHK  120
SDGETIEWLL QQAEPAVIAA TGTGTIPANF TSLNISLRSS GSSMSVPSQL RSSSYYNPNF  180
SLHQQRRTLF PGFGLSSETS STAALLNFQS TNIGNSLLQA KPEIRDTPSS LDLSDAAEEI  240
SIGRKRRPST EQELSSSSSQ HQMGGYLLQS STGTIPASHG GAQVPANFWM LTNTNNQVMG  300
GDPIWTFPSV NNSGLYRGTM SSGLHFMNFP APVALVPGQQ FGSSTGGGSN NNNNNNNSSS  360
TEGHLNILAG LNPYRSVSNT GVMEPQGSGS QSHHGGGGDD RHDTTSHQS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00396DAPTransfer from AT3G47620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818130.0LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453196.10.0PREDICTED: transcription factor TCP14
TrEMBLA0A1S3BVN40.0A0A1S3BVN4_CUCME; transcription factor TCP14
STRINGXP_008453196.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21203280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47620.14e-53TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14