PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C016808P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family LBD
Protein Properties Length: 204aa    MW: 22236.1 Da    PI: 6.9923
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C016808P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.31.2e-282100194
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C++ Cvl+  +     p++q +++ +++k+FG+s +l++++a+p ++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+
  MELO3C016808P1   2 SCNGCRVLRKGCSEACVLRSSLhwidsPEAQGNATLFLAKFFGRSDLLSFISAVPYHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQA 96 
                     6********************************************************************************************** PP

          DUF260  91 kael 94 
                     +a++
  MELO3C016808P1  97 AADT 100
                     9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.4181107IPR004883Lateral organ boundaries, LOB
PfamPF031953.1E-24299IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSEACVLR SSLHWIDSPE AQGNATLFLA KFFGRSDLLS FISAVPYHQR  60
PALFQSLLFE ACGRTVNPVS GAVGLLSSGN WHVCQAAADT ILNGGVLRPI PGIEISGNPT  120
PNLDDSSFTF NNDVWTTTTH NLQFYPSTPS DFRCLPDLGL NRTKKHPLEN RRSLDSEESV  180
MTSFGSGDLG EQRKETKLLN LFV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
GenBankLN6818610.0LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008452637.11e-150PREDICTED: LOB domain-containing protein 39-like
SwissprotQ9SZE86e-63LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A0A0L3S51e-139A0A0A0L3S5_CUCSA; Uncharacterized protein
STRINGVIT_18s0001g09250.t018e-68(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.13e-64LOB domain-containing protein 39