PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C015776P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 244aa    MW: 27097.6 Da    PI: 9.7414
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C015776P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.11.3e-31177234359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYegeHnh+
  MELO3C015776P1 177 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLIVTYEGEHNHP 234
                     99***********************9988****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.0E-18128173IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.808.9E-34163235IPR003657WRKY domain
PROSITE profilePS5081130.067170236IPR003657WRKY domain
SuperFamilySSF1182901.83E-27173235IPR003657WRKY domain
SMARTSM007742.0E-38175235IPR003657WRKY domain
PfamPF031061.6E-27177234IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDLLQCRNLH MGPLCLGNPS LELNTNAKSC SIQQIQSQSA ALYHHHLLQN RVVLNNNPNP  60
PQHEMVYLRS NNGVNLNFDS SSCTQHTMSS TRSFISSLSI DGSVANLDGS AFHLIGAPRS  120
SDQNSYHKRK CNGRGEDGSV KCGSNGRCHC SKKRKHRVKR SIKVPAISNK LADIPPDDYS  180
WRKYGQKPIK GSPHPRGYYK CSSMRGCPAR KHVERCLEEP SMLIVTYEGE HNHPRIPSQP  240
ANT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20168237775WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840360.0GU984036.1 Cucumis sativus WRKY protein (WRKY51) mRNA, complete cds.
GenBankHF9124230.0HF912423.1 Cucumis sativus mRNA for WRKY transcription factor 21 (WRKY-21 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008451288.10.0PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 21
SwissprotO043362e-92WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A1S3BQJ00.0A0A1S3BQJ0_CUCME; LOW QUALITY PROTEIN: probable WRKY transcription factor 21
STRINGXP_008451288.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.12e-86WRKY DNA-binding protein 21