PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C015332P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NF-YC
Protein Properties Length: 259aa    MW: 28612.4 Da    PI: 6.3411
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C015332P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC177.71.2e-55801831101
           NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     ql++fw +q   iek+tdfknh+lPlarikki+kadedv+misaeaPvl+++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdfl
  MELO3C015332P1  80 QLQTFWVNQyqeIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFL 174
                     89*****999999********************************************************************************** PP

           NF-YC  93 vdivprdel 101
                     vdivpr++l
  MELO3C015332P1 175 VDIVPREDL 183
                     ******987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471136.37E-3369174IPR009072Histone-fold
PfamPF008087.0E-22102165IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.108.1E-38103180IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDQQGHGQPS MGAVGSGGQI AYGSNLYHPN QMPVGPTSGS VVTSVGGIQS TSQPGGAQLA  60
QHQLAYQHIH QQQQQQLQQQ LQTFWVNQYQ EIEKVTDFKN HSLPLARIKK IMKADEDVRM  120
ISAEAPVLFA RACEMFILEL TLRSWNHTEE NKRRTLQKND IAAAITRTDI FDFLVDIVPR  180
EDLKDEVLTS IPRGSMTVGG PGDTLPYYMP SQHAPQVGAP GMIMGKPVMD PAMYAPQSHP  240
YMAPQMWQHA QDQAPPDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C2e-41661804119HapE
4g92_C2e-41661804119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152158RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
GenBankLN6818060.0LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008450660.10.0PREDICTED: nuclear transcription factor Y subunit C-9
SwissprotQ8L4B28e-86NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLA0A0A0LW220.0A0A0A0LW22_CUCSA; Uncharacterized protein
STRINGVIT_14s0128g00250.t011e-135(Vitis vinifera)
STRINGGLYMA19G42460.11e-135(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.41e-81nuclear factor Y, subunit C9