PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C015123P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family SRS
Protein Properties Length: 308aa    MW: 31116.5 Da    PI: 8.7366
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C015123P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702196.67.8e-61922574154
          DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkqsalsstklssaes 96 
                     g  +C+dCGnqakkdC+h+RCR CCksrgfdC+thvkstWvpaa+rrerq + aa+ + a  ++  +++  k++r   ++++++ s+t++s++ +
  MELO3C015123P1  92 GVGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSsgSTSGGKKPRLI-ASQTTTNSHTSTSNTPT 185
                     5568*********************************************9999998887777663345555556554.44444444555544443 PP

          DUF702  97 kkeletss...........lPeevsseavfrcvrvssvdd....geeelaYqtavsigGhvfkGiLydqGlee 154
                     + ++++ss           lPe+++++avf+cvrv++v+     g +e+aYq++v+igGhvfkG+Lyd+G+e+
  MELO3C015123P1 186 P-SFDASSaadmsskkakkLPEQIRAPAVFKCVRVTAVEGgssgGGNEYAYQAVVKIGGHVFKGYLYDHGVEA 257
                     3.55555556677789999*******************9733335689**********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.3E-5795256IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.9E-2595137IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.6E-24204255IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MWPSSRPLTI GYNHTPAPTP DMVGLMASGF GVGVSVLPLL TGLAPSSVGI EEANLMISRG  60
GGGDEGGGGI QFNGNNLDGF GILGGGSSLN SGVGTCHDCG NQAKKDCSHR RCRSCCKSRG  120
FDCSTHVKST WVPAARRRER QMMGAASDAA AGGTSSGSTS GGKKPRLIAS QTTTNSHTST  180
SNTPTPSFDA SSAADMSSKK AKKLPEQIRA PAVFKCVRVT AVEGGSSGGG NEYAYQAVVK  240
IGGHVFKGYL YDHGVEARDG FPTMSNLHLG DGGSTSSPVI DPSDVYGSSA TRGGGLAGGS  300
GYGNSIN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818070.0LN681807.1 Cucumis melo genomic scaffold, anchoredscaffold00024.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008450344.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
SwissprotQ94CK93e-71LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A1S3BQ170.0A0A1S3BQ17_CUCME; protein LATERAL ROOT PRIMORDIUM 1
STRINGXP_008450344.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2455933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.25e-47Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]