PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C014564P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family SRS
Protein Properties Length: 367aa    MW: 37742.6 Da    PI: 7.5431
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C014564P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702214.32.8e-661433013153
          DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaes 96 
                     s t++CqdCGnqakkdC+h+RCRtCC+srgfdCathvkstWvpaa+rrerq ++ +a++ a  s+ +++ +k++r      ++++s+t++s++++
  MELO3C014564P1 143 SATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTATAAADGSSaSTSGAKKPRL---IPSQTTSHTSTSNTTP 234
                     57899*********************************************88777665555443325555666665...4777788899999999 PP

          DUF702  97 kkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                     +++l+tss          lP +++++avf+cvrv++vddg++e+aY++ v+igGhvfkG+LydqG+e
  MELO3C014564P1 235 PRSLDTSSshqdvgnkeaLPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVE 301
                     999999999999*****************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.7E-62145301IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016234.4E-26147189IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016245.5E-28253300IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MWSAAAQRSL NYGLGSEMGM VGLRDVYVVA PASSFNQNPH QHDVNLLSDP HSLAVSNPAT  60
ALGVGVGVGV IPLLTAGPCV GVEEENLFGN RSSNRGGGIQ FQQSTQHYLK KTPSGSLDHV  120
SGTNNELIGG GIGGSGGLAS SSSATTTCQD CGNQAKKDCS HRRCRTCCRS RGFDCATHVK  180
STWVPAARRR ERQLMAVTAT AAADGSSAST SGAKKPRLIP SQTTSHTSTS NTTPPRSLDT  240
SSSHQDVGNK EALPGQIRAQ AVFKCVRVTA VDDGDDEYAY HAMVKIGGHV FKGFLYDQGV  300
EAGDGFPNVS ELHLGDGVGG GGTINNRNGS SSSPLVDPSD VYNTAASGSG GVPGFLGGSN  360
YGNQIS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818420.0LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008449658.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X1
SwissprotQ94CK91e-93LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A1S3BMJ00.0A0A1S3BMJ0_CUCME; protein LATERAL ROOT PRIMORDIUM 1-like isoform X1
STRINGXP_008449658.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65043351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.45e-63Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]