PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C013935P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 256aa    MW: 28460 Da    PI: 8.3336
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C013935P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00066628123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    +kC  C++sF++   L  H++ H
  MELO3C013935P1  6 HKCRLCSRSFTNGRALGGHMKAH 28
                    79******************998 PP
2zf-C2H215.16.4e-05146168123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C k+F+++  L  H +++
  MELO3C013935P1 146 FRCGKCRKTFRSNRALFGHRKVC 168
                     89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.88E-5230No hitNo description
PfamPF139121.1E-6529IPR007087Zinc finger, C2H2
SMARTSM003550.048628IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.806628IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SuperFamilySSF576678.13E-8144216No hitNo description
SMARTSM0035533146166IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.806146175IPR007087Zinc finger, C2H2
PfamPF139120.029146166IPR007087Zinc finger, C2H2
PROSITE profilePS501579.702194216IPR007087Zinc finger, C2H2
SMARTSM003550.056194216IPR015880Zinc finger, C2H2-like
PfamPF139123.7E-11194218IPR007087Zinc finger, C2H2
PROSITE patternPS000280196216IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEEERHKCRL CSRSFTNGRA LGGHMKAHLA TFSIEHQKTF KSPDLEMVSV NGSISIVQDR  60
ESETESKNPT RRRSKRTRRF NTESLPSPSP SPEPASSISD TSPEEDVAIC LVMLSMEKPS  120
SWKDQSRTPE SEKSTAAMVG RVRKSFRCGK CRKTFRSNRA LFGHRKVCRK EGEEEDGEEE  180
EEKGMVNGGN WKIFKCPYCC KVFGSGQALG GHKRSHLQGS IRTAIDGSSS KLEIGLDLNL  240
PAPLEEDDYS VVSDV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818600.0LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008449167.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLA0A1S3BKU00.0A0A1S3BKU0_CUCME; zinc finger protein ZAT4-like
STRINGXP_008449167.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.16e-29C2H2-like zinc finger protein