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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C013935P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | C2H2 | ||||||||
Protein Properties | Length: 256aa MW: 28460 Da PI: 8.3336 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12 | 0.00066 | 6 | 28 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC C++sF++ L H++ H MELO3C013935P1 6 HKCRLCSRSFTNGRALGGHMKAH 28 79******************998 PP | |||||||
2 | zf-C2H2 | 15.1 | 6.4e-05 | 146 | 168 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k+F+++ L H +++ MELO3C013935P1 146 FRCGKCRKTFRSNRALFGHRKVC 168 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.88E-5 | 2 | 30 | No hit | No description |
Pfam | PF13912 | 1.1E-6 | 5 | 29 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.048 | 6 | 28 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.806 | 6 | 28 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 8 | 28 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.13E-8 | 144 | 216 | No hit | No description |
SMART | SM00355 | 33 | 146 | 166 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.806 | 146 | 175 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 0.029 | 146 | 166 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.702 | 194 | 216 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.056 | 194 | 216 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 3.7E-11 | 194 | 218 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 196 | 216 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MEEERHKCRL CSRSFTNGRA LGGHMKAHLA TFSIEHQKTF KSPDLEMVSV NGSISIVQDR 60 ESETESKNPT RRRSKRTRRF NTESLPSPSP SPEPASSISD TSPEEDVAIC LVMLSMEKPS 120 SWKDQSRTPE SEKSTAAMVG RVRKSFRCGK CRKTFRSNRA LFGHRKVCRK EGEEEDGEEE 180 EEKGMVNGGN WKIFKCPYCC KVFGSGQALG GHKRSHLQGS IRTAIDGSSS KLEIGLDLNL 240 PAPLEEDDYS VVSDV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681860 | 0.0 | LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008449167.1 | 0.0 | PREDICTED: zinc finger protein ZAT4-like | ||||
TrEMBL | A0A1S3BKU0 | 0.0 | A0A1S3BKU0_CUCME; zinc finger protein ZAT4-like | ||||
STRING | XP_008449167.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02030.1 | 6e-29 | C2H2-like zinc finger protein |