PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C012508P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 82aa    MW: 9262.36 Da    PI: 7.7801
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C012508P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.39.6e-101158348
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48
                      WT+ E + + +a + + ++   +W  +a+ +g g+t++++k ++q +l
   MELO3C012508P1 11 QWTAIENKAFEKALAIYDKDtpeRWLNVAKAIG-GKTEEDVKRHYQLLL 58
                     6********************************.************875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.852762IPR017884SANT domain
SMARTSM007171.2E-8860IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-131066IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-51064IPR009057Homeodomain-like
PfamPF002491.9E-71157IPR001005SANT/Myb domain
CDDcd001675.61E-81258No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MASMSAHGST QWTAIENKAF EKALAIYDKD TPERWLNVAK AIGGKTEEDV KRHYQLLLED  60
VNHIENGQIP FPYRNSTRSS R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-29176176RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN7132551e-135LN713255.1 Cucumis melo genomic chromosome, chr_1.
GenBankLN6818001e-135LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008447026.13e-56PREDICTED: protein RADIALIS-like 1
SwissprotF4JVB82e-31RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A0A0K3K01e-52A0A0A0K3K0_CUCSA; Uncharacterized protein
STRINGVIT_03s0063g02670.t013e-31(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-32RAD-like 1