PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C012505P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 79aa    MW: 8956.21 Da    PI: 8.9571
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C012505P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.21.8e-081258347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     +WT    + + +a + + ++   +W  +++ +g g+t++++k ++q +
   MELO3C012505P1 12 PWTVKQNKAFEKALAVYDKDtpeRWLNVSKAIG-GKTEEEVKRHYQLL 58
                     8********************************.***********975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.0E-6961IPR001005SANT/Myb domain
SuperFamilySSF466892.62E-121167IPR009057Homeodomain-like
CDDcd001676.36E-61259No hitNo description
PfamPF002495.1E-61257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-51365IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MASMTAHGPS TPWTVKQNKA FEKALAVYDK DTPERWLNVS KAIGGKTEEE VKRHYQLLVE  60
DVKHIESGEI PFPYRRLT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-32578376RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN7132551e-130LN713255.1 Cucumis melo genomic chromosome, chr_1.
GenBankLN6818001e-130LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011658943.18e-43PREDICTED: protein RADIALIS-like 1
SwissprotQ58FS34e-33RAD_ANTMA; Transcription factor RADIALIS
TrEMBLA0A0A0K3K09e-43A0A0A0K3K0_CUCSA; Uncharacterized protein
STRINGPOPTR_0009s11930.12e-33(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.24e-32RAD-like 6