PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C012474P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family SRS
Protein Properties Length: 304aa    MW: 32059.7 Da    PI: 8.6688
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C012474P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702193.57.4e-601182836154
          DUF702   6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa......aeaaskrkrelks.kkqsalsstklss 93 
                     a C+dCGn+akk+C+++RCRtCCk rg +C+thvkstWvpaa+rrerq    +    +a+        ++a +kr+r l   ++++a++++++s+
  MELO3C012474P1 118 AVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDggssgsSSAGAKRPRVLIPsQSAAAAAAASTSN 212
                     68*********************************************987766554444444566676888899999885515556677889999 PP

          DUF702  94 aeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                     a++++++et+s          lP +v+++avfrc rv++++ ge elaYq++v+igGhvfkG+LydqG+++
  MELO3C012474P1 213 ATTPRSFETTSshqdasfkksLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADD 283
                     *****99999999*******************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051429.6E-57118282IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.4E-24119161IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.4E-26234280IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MLGLRDVLFI APTPSSLHQQ TQIISSDHHP SLPLPSSTAL GVSVGIFPLL AATPCLPPSQ  60
PPPNNHTPDD VTDRTRTFDN LKRTQDFGFG KGESLIGGPG NNGSDEHVKG DAGDGSMAVC  120
RDCGNRAKKE CEYRRCRTCC KGRGNHCSTH VKSTWVPAAR RRERQMLVVM DGVATASGDG  180
GSSGSSSAGA KRPRVLIPSQ SAAAAAAAST SNATTPRSFE TTSSHQDASF KKSLPGHVRA  240
PAVFRCHRVT AISSGEGELA YQATVNIGGH VFKGFLYDQG ADDKNAFPSI SHLHLDSGNH  300
HRE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008446964.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A1S3BFS50.0A0A1S3BFS5_CUCME; protein LATERAL ROOT PRIMORDIUM 1
STRINGXP_008446964.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57043154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.27e-55Lateral root primordium (LRP) protein-related