PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C012393P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 362aa    MW: 40491.6 Da    PI: 7.1141
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C012393P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00048237259123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C +Cg  F++   L  H+r+H
  MELO3C012393P1 237 HECAICGAEFTSGQALGGHMRRH 259
                     78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.0E-12160185IPR007087Zinc finger, C2H2
SuperFamilySSF576677.16E-7161183No hitNo description
PROSITE profilePS5015710.076161188IPR007087Zinc finger, C2H2
SMARTSM003550.8161183IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280163183IPR007087Zinc finger, C2H2
SuperFamilySSF576677.16E-7232259No hitNo description
PfamPF139126.9E-12236261IPR007087Zinc finger, C2H2
PROSITE profilePS501579.515237259IPR007087Zinc finger, C2H2
SMARTSM003550.056237259IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280239259IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEVVDHQENS DMGSKEQQQA ALIAKGKRTK RQRLHSPIPF AVPTNSSSGE LGGFVADHDD  60
HHSDFVPQNN NDHYQNNTNF SPSSSSAHDE LLQQFNNNTS TTTEEEEDMA NCLILLAQGR  120
PPCSPLTKQL DTGPFPHVTN NVRRFSAENV EKGGGVGCYA YECKTCYRTF PSFQALGGHR  180
ASHKKPKAME AEKKHILSSD DEEIQFKNNN ITTTNSLSLQ LNQRGSLNNS SGKAKVHECA  240
ICGAEFTSGQ ALGGHMRRHR AMPVGTNTAL SLTPMNMETE DQRQPKRQRS VLSLDLDLNL  300
PAPQEHDQRS ESKFLIKSNQ QQQQQQPQQQ QQQQQQQQHN NKQQQQQPLV FPARTLVDCH  360
Y*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008446814.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A1S3BFZ90.0A0A1S3BFZ9_CUCME; zinc finger protein ZAT5-like
STRINGXP_008446814.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-52C2H2 family protein