PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C012212P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TCP
Protein Properties Length: 310aa    MW: 35376.9 Da    PI: 10.3521
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C012212P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.95e-40721933130
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...ssssaseceaesssssasnsssgkaaksa 94 
                     +kkdrhski+T++g+RdRR+Rls+e+a+ fFdLqd+LGfdk+skt+eWL++++  aike  +    + +s+s+c        +s++  ++ +k+ 
  MELO3C012212P1  72 KKKDRHSKICTSKGPRDRRMRLSLEIARNFFDLQDMLGFDKASKTVEWLFTKSRSAIKEVKEKylsEVKSKSSC-------YSSTDLVTNLCKEV 159
                     79*************************************************************77655555666.......33333344677888 PP

             TCP  95 akskksqksaasalnlakesrakarararertrekm 130
                      +s k++++    + ++kesr kar rarertr k 
  MELO3C012212P1 160 LPSGKKRRRRF--RIVDKESRYKARVRARERTRAKS 193
                     88888888888..9*******************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-3472193IPR005333Transcription factor, TCP
PROSITE profilePS5136935.4173131IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.318175192IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MIIKSSFWAT FCILKNTNYL QTILIKLELL KVAITQTMKQ QQQQQPIIPP NTKPKPIIVH  60
QNPRKRSSSE MKKKDRHSKI CTSKGPRDRR MRLSLEIARN FFDLQDMLGF DKASKTVEWL  120
FTKSRSAIKE VKEKYLSEVK SKSSCYSSTD LVTNLCKEVL PSGKKRRRRF RIVDKESRYK  180
ARVRARERTR AKSIRRGLEV SKSDLEGNPN GVRKLGDVSE ENSSNKSKIS THVSLCENEK  240
DLGSEEKNSD SLIMDKRVSK EICSEDIHLL PDSSMDMPSL SLDTMKASSA GLKLLELDEV  300
DGVLIFYGE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163168KKRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008446552.10.0PREDICTED: transcription factor TCP12-like
TrEMBLA0A1S3BFB20.0A0A1S3BFB2_CUCME; transcription factor TCP12-like
STRINGXP_008446552.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.15e-31TCP domain protein 12