PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C012086P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TCP
Protein Properties Length: 366aa    MW: 38962.1 Da    PI: 9.4586
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C012086P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP132.44.3e-41682392135
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 
                     ++k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s++       
  MELO3C012086P1  68 PPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSTISAPshlrtsy 162
                     789******************************************************************99987777777777555556677778 PP

             TCP  89 ...............kaaksaakskksqksaasalnlakesr...........................akarararertrekmriknk 135
                                    +            + +++++nl ++s+                           +k r+++ e+++e+ + +++
  MELO3C012086P1 163 fsptqfavrtrsdlwD------------RTNNHNHNLVDDSStflnfnsssyvnvfkqdqggidvvetgKKRRSEQSESSSENYMVQTS 239
                     8776655555554331............2222223333333334444444447777777788888888888888888888887777655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-3973200IPR005333Transcription factor, TCP
PROSITE profilePS5136927.92374128IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MIMDGENGIR RPNFPLQLLE KKKEEEEEQQ QQHPCSSSAN NGGTKTTTTI TTTPNSNLQS  60
SSSPKKPPPK RATTKDRHTK VDGRGRRIRM PALCAARVFQ LTRELGHKSD GETIEWLLQQ  120
AEPAVIAATG TGTIPANFTS LNISLRSSGS TISAPSHLRT SYFSPTQFAV RTRSDLWDRT  180
NNHNHNLVDD SSTFLNFNSS SYVNVFKQDQ GGIDVVETGK KRRSEQSESS SENYMVQTST  240
GSIPASQSSQ LPATFWMVTN PTNQGSDQMW TFPSVGNSSM LRGTGGGGGG GGGFHFMNLP  300
PPMALLPSGQ QLGTGIGGGG GPATDSHLGM LAALSAYRTT MPGLSVSESP TRGVGGVTSN  360
NPDQS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008446337.10.0PREDICTED: transcription factor TCP15
TrEMBLA0A1S3BFM60.0A0A1S3BFM6_CUCME; transcription factor TCP15
STRINGXP_008446337.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21203280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.13e-48TCP family protein