PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C011835P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TCP
Protein Properties Length: 405aa    MW: 41215.5 Da    PI: 9.74
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C011835P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.19e-4042159392
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 
                     + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  + s +ss+s+ s++        
  MELO3C011835P1  42 ANKRSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSsLNISIRSSGSTLSAPpsksaphs 136
                     579*****************************************************************888655555555553333344344455 PP

             TCP  89 ...................kaak 92 
                                        ++a+
  MELO3C011835P1 137 fhgaalalahhphayeegfAHAA 159
                     55555555555555555542222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.0E-4046177IPR005333Transcription factor, TCP
PROSITE profilePS5136928.44247101IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MASTSSSAST HQLDASLVIA TRSDTTAAAA DPSPRSTSTT NANKRSTKDR HTKVEGRGRR  60
IRMPATCAAR VFQLTRELGH KSDGETIEWL LQQAEPAIIA ATGTGTIPAN FSSLNISIRS  120
SGSTLSAPPS KSAPHSFHGA ALALAHHPHA YEEGFAHAAL LGFHHQQQQQ QQHQLNLMTA  180
DQIGEGLPSG GGGESTDNYM RKRFREDLFK EDTQSPGESS GGGGSPKAMK SDLQLEKQQQ  240
QQPSASSSSG LLRPGAAMWA VATPGPSSGA SNTFWMLPVT AGSGGGNVGN SSGGGSGGGG  300
GGGGGGLEAH QMWPFSTSGN TLQAPLHLMP RFNIPGGVEI QAAAAGGGRG GGGQLQLGSM  360
LMQQATGGGG GGGLGVSETN LGMLAALNAA YNSRSGSGFK YQFR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1346352GGRGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008445993.20.0PREDICTED: transcription factor TCP8
TrEMBLA0A1S3BEP40.0A0A1S3BEP4_CUCME; transcription factor TCP8
STRINGXP_008445993.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60773050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.19e-51TCP family protein